Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | 
            Last change
 on this file since b25fa3 was             56f73b, checked in by Frederik Heber <heber@…>, 15 years ago           | 
        
        
          | 
             
Added config.h also to all header files, code check test ascertain this in the future. 
 
- as we want to use config.h to pass stuff such as MEMDEBUG, NDEBUG,
LOG_OBSERVER, we have to make sure that it is present in each and every
file.
 - split up CodeChecks/testsuite.at: each test has its own .at file.
  
           | 
        
        
          
            
              - 
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 set to                 
100644
               
             
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          | 
            File size:
            3.1 KB
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| Line |   | 
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| 1 | /*
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| 2 |  * PcpParser.hpp
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| 3 |  *
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| 4 |  *  Created on: 12.06.2010
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| 5 |  *      Author: heber
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| 6 |  */
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| 7 | 
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| 8 | #ifndef PCPPARSER_HPP_
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| 9 | #define PCPPARSER_HPP_
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| 10 | 
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| 11 | // include config.h
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| 12 | #ifdef HAVE_CONFIG_H
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| 13 | #include <config.h>
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| 14 | #endif
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| 15 | 
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| 16 | 
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| 17 | #include <iosfwd>
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| 18 | #include "Parser/FormatParser.hpp"
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| 19 | 
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| 20 | /**
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| 21 |  * Parser for PCP config files.
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| 22 |  */
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| 23 | class PcpParser : public FormatParser {
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| 24 | public:
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| 25 |   PcpParser();
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| 26 |   ~PcpParser();
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| 27 |   void load(std::istream* file);
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| 28 |   void save(std::ostream* file, const std::vector<atom *> &atoms);
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| 29 | 
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| 30 |   bool operator==(const PcpParser& b) const;
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| 31 | 
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| 32 | private:
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| 33 | 
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| 34 |   void ParseThermostats(class ConfigFileBuffer * const fb);
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| 35 |   void OutputAtoms(ostream *file, const std::vector<atom *> &allatoms, map<int, int> &ZtoIndexMap);
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| 36 |   void OutputElements(ostream *file, const std::vector<atom *> &allatoms, map<int, int> &ZtoIndexMap);
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| 37 |   void CalculateOrbitals(const std::vector<atom *> &allatoms);
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| 38 | 
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| 39 |   class StructParallelization {
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| 40 |   public:
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| 41 |     StructParallelization();
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| 42 |     ~StructParallelization();
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| 43 | 
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| 44 |     int ProcPEGamma;
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| 45 |     int ProcPEPsi;
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| 46 |   } Parallelization;
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| 47 | 
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| 48 |   /*
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| 49 |    * Contains all the paths and names
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| 50 |    */
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| 51 |   class StructPaths {
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| 52 |   public:
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| 53 |     StructPaths();
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| 54 |     ~StructPaths();
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| 55 | 
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| 56 |     char *databasepath;
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| 57 |     char *configname;
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| 58 |     char *mainname;
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| 59 |     char *defaultpath;
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| 60 |     char *pseudopotpath;
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| 61 |   } Paths;
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| 62 | 
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| 63 |   /*
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| 64 |    * Contains all Do/Don't switches
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| 65 |    */
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| 66 |   class StructSwitches {
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| 67 |   public:
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| 68 |     StructSwitches();
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| 69 |     ~StructSwitches();
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| 70 | 
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| 71 |     int DoConstrainedMD;
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| 72 |     int DoOutVis;
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| 73 |     int DoOutMes;
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| 74 |     int DoOutNICS;
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| 75 |     int DoOutOrbitals;
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| 76 |     int DoOutCurrent;
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| 77 |     int DoFullCurrent;
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| 78 |     int DoPerturbation;
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| 79 |     int DoWannier;
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| 80 |   } Switches;
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| 81 | 
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| 82 |   /*
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| 83 |    * Contains parameters regarding localization of orbitals or magnetic perturbation
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| 84 |    */
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| 85 |   class StructLocalizedOrbitals {
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| 86 |   public:
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| 87 |     StructLocalizedOrbitals();
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| 88 |     ~StructLocalizedOrbitals();
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| 89 | 
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| 90 |     int CommonWannier;
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| 91 |     double SawtoothStart;
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| 92 |     int VectorPlane;
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| 93 |     double VectorCut;
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| 94 |     int UseAddGramSch;
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| 95 |     int Seed;
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| 96 |     double EpsWannier;
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| 97 |   } LocalizedOrbitals;
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| 98 | 
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| 99 |   /*
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| 100 |    * Contains all step count and other epsilon threshold parameters
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| 101 |    */
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| 102 |   class StructStepCounts {
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| 103 |   public:
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| 104 |     StructStepCounts();
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| 105 |     ~StructStepCounts();
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| 106 | 
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| 107 |     int MaxMinStopStep;
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| 108 |     int InitMaxMinStopStep;
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| 109 | 
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| 110 |     int OutVisStep;
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| 111 |     int OutSrcStep;
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| 112 |     int MaxPsiStep;
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| 113 | 
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| 114 |     int MaxOuterStep;
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| 115 | 
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| 116 |     int MaxMinStep;
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| 117 |     double RelEpsTotalEnergy;
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| 118 |     double RelEpsKineticEnergy;
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| 119 |     int MaxMinGapStopStep;
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| 120 |     int MaxInitMinStep;
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| 121 |     double InitRelEpsTotalEnergy;
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| 122 |     double InitRelEpsKineticEnergy;
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| 123 |     int InitMaxMinGapStopStep;
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| 124 |   } StepCounts;
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| 125 | 
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| 126 |   /*
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| 127 |    * Contains all parameters specific to the plane wave basis set
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| 128 |    */
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| 129 |   class StructPlaneWaveSpecifics {
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| 130 |   public:
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| 131 |     StructPlaneWaveSpecifics();
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| 132 |     ~StructPlaneWaveSpecifics();
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| 133 | 
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| 134 |     int PsiType;
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| 135 |     int MaxPsiDouble;
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| 136 |     int PsiMaxNoUp;
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| 137 |     int PsiMaxNoDown;
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| 138 |     double ECut;
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| 139 |     int MaxLevel;
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| 140 |     int RiemannTensor;
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| 141 |     int LevRFactor;
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| 142 |     int RiemannLevel;
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| 143 |     int Lev0Factor;
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| 144 |     int RTActualUse;
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| 145 |     int AddPsis;
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| 146 |     double RCut;
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| 147 |   } PlaneWaveSpecifics;
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| 148 | 
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| 149 |   bool FastParsing;
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| 150 | 
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| 151 |   double Deltat;
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| 152 |   int IsAngstroem;
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| 153 |   int RelativeCoord;
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| 154 |   int StructOpt;
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| 155 |   int MaxTypes;
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| 156 |   string basis;
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| 157 | };
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| 158 | 
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| 159 | #endif /* PCPPARSER_HPP_ */
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