| [ee50c1] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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| [0aa122] | 4 |  * Copyright (C)  2010-2012 University of Bonn. All rights reserved.
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| [ee50c1] | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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 | 6 |  */
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 | 7 | 
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 | 8 | /*
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 | 9 |  * FormatParser_Parameters.cpp
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 | 10 |  *
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 | 11 |  *  Created on: Sep 30, 2011
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 | 12 |  *      Author: heber
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 | 13 |  */
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 | 14 | 
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 | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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 | 20 | #include "CodePatterns/MemDebug.hpp"
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 | 21 | 
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| [7f570c] | 22 | #include <iostream>
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 | 23 | #include <boost/algorithm/string.hpp>
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 | 24 | #include <boost/tokenizer.hpp>
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 | 25 | #include <sstream>
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| [ee50c1] | 26 | #include <string>
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 | 27 | 
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| [7f570c] | 28 | #include "CodePatterns/Assert.hpp"
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 | 29 | #include "CodePatterns/Log.hpp"
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 | 30 | 
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| [ee50c1] | 31 | #include "Parameters/Parameter.hpp"
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 | 32 | #include "FormatParser_Parameters.hpp"
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 | 33 | 
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 | 34 | /** Constructor of class FormatParser_Parameters.
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 | 35 |  *
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 | 36 |  * \note we make sure that storage is always present
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 | 37 |  *
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 | 38 |  */
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 | 39 | FormatParser_Parameters::FormatParser_Parameters() :
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 | 40 |   storage(new ParameterStorage)
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 | 41 | {}
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 | 42 | 
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 | 43 | /** Copy constructor of class FormatParser_Parameters.
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 | 44 |  *
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 | 45 |  * @param _parameters instance to copy from
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 | 46 |  */
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 | 47 | FormatParser_Parameters::FormatParser_Parameters(const FormatParser_Parameters &_parameters) :
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 | 48 |   storage(new ParameterStorage(*_parameters.storage))
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 | 49 | {}
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 | 50 | 
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 | 51 | 
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 | 52 | /** Destructor of class FormatParser_Parameters.
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 | 53 |  *
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 | 54 |  */
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 | 55 | FormatParser_Parameters::~FormatParser_Parameters()
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 | 56 | {
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 | 57 |   delete storage;
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 | 58 | }
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 | 59 | 
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 | 60 | /** Implements the Parameter::clone() function.
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 | 61 |  *
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 | 62 |  * @return another instance with an identical copy of each parameter in \a storage
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 | 63 |  */
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 | 64 | FormatParser_Parameters* FormatParser_Parameters::clone() const
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 | 65 | {
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 | 66 |   return (new FormatParser_Parameters(*this));
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 | 67 | }
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 | 68 | 
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 | 69 | /** This makes this instance a clone of \a _instance.
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 | 70 |  *
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 | 71 |  * \note This is basically the other way round to clone().
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 | 72 |  *
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 | 73 |  * @param _instance instance to clone from
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 | 74 |  */
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 | 75 | void FormatParser_Parameters::makeClone(const FormatParser_Parameters &_instance)
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 | 76 | {
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 | 77 |   // we simply remove storage
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 | 78 |   delete storage;
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 | 79 |   // and clone the one from _instance
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 | 80 |   storage = new ParameterStorage(*_instance.storage);
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 | 81 | }
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 | 82 | 
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 | 83 | /** Adds a parameter to \a storage.
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 | 84 |  *
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 | 85 |  * This just eases use, saves some typing and is more clear as to what is done.
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 | 86 |  *
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 | 87 |  * @param instance parameter to add
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 | 88 |  */
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 | 89 | void FormatParser_Parameters::appendParameter(Parameter *instance)
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 | 90 | {
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 | 91 |   storage->registerInstance(instance);
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 | 92 | }
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 | 93 | 
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 | 94 | /** Checks for presence of a parameter in \a storage.
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 | 95 |  *
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 | 96 |  * This just eases use, saves some typing and is more clear as to what is done.
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 | 97 |  *
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 | 98 |  * @return true - parameter by this \a _name is present in storage, false - else
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 | 99 |  */
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 | 100 | bool FormatParser_Parameters::haveParameter(const std::string &_name) const
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 | 101 | {
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 | 102 |   return storage->isPresentByName(_name);
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 | 103 | }
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 | 104 | 
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 | 105 | /** Gets a parameter from \a storage.
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 | 106 |  *
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 | 107 |  * This just eases use, saves some typing and is more clear as to what is done.
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 | 108 |  *
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 | 109 |  * @return pointer to instance with this \a _name
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 | 110 |  */
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 | 111 | Parameter *FormatParser_Parameters::getParameter(const std::string &_name) const
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 | 112 | {
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 | 113 |   return storage->getByName(_name);
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 | 114 | }
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| [7f570c] | 115 | 
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 | 116 | /** Output operator for the contents of FormatParser_Parameters::params.
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 | 117 |  *
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 | 118 |  * @param ost output stream
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 | 119 |  * @param params reference to FormatParser_Parameters containing params.
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 | 120 |  * @return reference to output stream for concatenation
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 | 121 |  */
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 | 122 | std::ostream & operator << (std::ostream& ost, const FormatParser_Parameters ¶ms)
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 | 123 | {
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 | 124 |   // this is ugly, but with boost::any to safeguard const-ness is plain impossible
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 | 125 |   std::ostringstream output;
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 | 126 |   ASSERT(params.storage != NULL,
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 | 127 |       "operator<<(FormatParser_Parameters) - storage is NULL.");
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 | 128 |   for (ParameterStorage::const_iterator iter = params.storage->getBeginIter();
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 | 129 |       iter != params.storage->getEndIter();
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 | 130 |       ++iter)
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| [41d023] | 131 |     if (!iter->second->get().empty())
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 | 132 |       output << iter->first <<  "=" << iter->second->get() << ";";
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| [7f570c] | 133 |   ost << output.str();
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 | 134 |   return ost;
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 | 135 | }
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 | 136 | 
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 | 137 | /** Input operator for a list of parameters to place into \a params.
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 | 138 |  *
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 | 139 |  * @param ist input stream
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 | 140 |  * @param params parameters to parse into
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 | 141 |  * @return input stream for concatenation
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 | 142 |  */
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 | 143 | std::istream & operator >> (std::istream& ist, FormatParser_Parameters ¶ms)
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 | 144 | {
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 | 145 |   typedef boost::tokenizer<boost::char_separator<char> >
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 | 146 |       tokenizer;
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 | 147 |   boost::char_separator<char> semicolonsep(";");
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 | 148 |   boost::char_separator<char> equalitysep("=");
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 | 149 |   boost::char_separator<char> ticksep("\"");
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 | 150 |   std::string line;
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 | 151 |   std::getline( ist, line );
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| [47d041] | 152 |   //LOG(0, "INFO: full line of parameters is '" << line << "'");
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| [7f570c] | 153 |   tokenizer tokens(line, semicolonsep);
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 | 154 |   ASSERT(tokens.begin() != tokens.end(),
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 | 155 |       "operator<< on FormatParser_Parameters - empty string, need at least ';' in line "+line+"!");
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 | 156 |   for (tokenizer::iterator tok_iter = tokens.begin();
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 | 157 |         tok_iter != tokens.end(); ++tok_iter) {
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 | 158 |     //LOG(2, "INFO: (key,value) pair is: " << *tok_iter << ".");
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 | 159 |     tokenizer paramtokens(*tok_iter, equalitysep);
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 | 160 |     if (paramtokens.begin() != paramtokens.end()) {
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 | 161 |       tokenizer::iterator tok_paramiter = paramtokens.begin();
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 | 162 |       ASSERT(tok_paramiter != paramtokens.end(),
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 | 163 |           "operator<< on FormatParser_Parameters - missing value before ' =' in token "+*tok_iter+"!");
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| [41d023] | 164 |       tokenizer::iterator tok_valueiter = tok_paramiter;
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 | 165 |       tokenizer::iterator tok_checkiter = ++tok_valueiter;
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| [7f570c] | 166 |       ASSERT(tok_valueiter != paramtokens.end(),
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 | 167 |           "operator<< on FormatParser_Parameters - missing value after ' =' in token "+*tok_iter+"!");
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| [41d023] | 168 |       ++tok_checkiter;
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| [7f570c] | 169 |       ASSERT(tok_checkiter == paramtokens.end(),
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 | 170 |           "operator<< on FormatParser_Parameters - still more tokens after ' =' in token "+*tok_iter+":"
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 | 171 |           +*tok_checkiter+"!");
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| [41d023] | 172 |       LOG(3, "INFO: key is '" << *tok_paramiter << "', value is '" << *tok_valueiter << "'.");
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 | 173 |       // TODO: throw exception instead of ASSERT
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| [7f570c] | 174 |       std::string key(*tok_paramiter);
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 | 175 |       std::string value(*tok_valueiter);
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 | 176 |       boost::trim(key);
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 | 177 |       boost::trim(value);
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 | 178 |       tokenizer ticklesstokens(value, ticksep);
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 | 179 |       ASSERT(ticklesstokens.begin() != ticklesstokens.end(),
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 | 180 |           "operator<< on FormatParser_Parameters - no tokens present after removing ticks in token "+*tok_valueiter+"!");
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 | 181 |       std::stringstream valuestream(*(ticklesstokens.begin()));
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 | 182 |       //LOG(2, "INFO: Token pair is " << key << "," << valuestream.str());
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 | 183 | 
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 | 184 |       // TODO: throw exception instead of DoeLog()
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 | 185 |       ASSERT(params.haveParameter(key),
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 | 186 |           "operator >> on FormatParser_Parameters - unknown parameter name '"
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 | 187 |           +key+"' with value "+valuestream.str()+"!");
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 | 188 |       if (params.haveParameter(key)) {
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 | 189 |         Parameter *instance = params.getParameter(key);
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 | 190 |         instance->set(valuestream.str());
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 | 191 |       }
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 | 192 |     } else {
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 | 193 |       ist.setstate(std::ios::eofbit);
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 | 194 |     }
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 | 195 |   }
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 | 196 |   return ist;
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 | 197 | }
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