1 | # PLEASE adhere to the alphabetical ordering in this Makefile!
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2 | # Also indentation by a single tab
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3 |
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4 | SUBDIRS = \
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5 | Exceptions \
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6 | Parser \
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7 | LinearAlgebra \
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8 | Shapes \
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9 | Actions \
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10 | UIElements
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11 |
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12 | AM_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
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13 |
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14 | ATOMSOURCE = \
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15 | atom.cpp \
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16 | AtomicInfo.cpp \
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17 | atom_atominfo.cpp \
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18 | atom_bondedparticle.cpp \
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19 | atom_bondedparticleinfo.cpp \
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20 | atom_graphnode.cpp \
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21 | atom_graphnodeinfo.cpp \
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22 | atom_particleinfo.cpp \
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23 | atom_trajectoryparticle.cpp \
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24 | atom_trajectoryparticleinfo.cpp
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25 | ATOMHEADER = \
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26 | atom.hpp \
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27 | AtomicInfo.hpp \
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28 | atom_atominfo.hpp \
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29 | atom_bondedparticle.hpp \
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30 | atom_bondedparticleinfo.hpp \
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31 | atom_graphnode.hpp \
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32 | atom_graphnodeinfo.hpp \
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33 | atom_particleinfo.hpp \
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34 | atom_trajectoryparticle.hpp \
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35 | atom_trajectoryparticleinfo.hpp
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36 |
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37 | ANALYSISSOURCE = \
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38 | analysis_bonds.cpp \
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39 | analysis_correlation.cpp
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40 | ANALYSISHEADER = \
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41 | analysis_bonds.hpp \
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42 | analysis_correlation.hpp
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43 |
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44 | ACTIONSSOURCE = \
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45 | Actions/Action.cpp \
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46 | Actions/ActionHistory.cpp \
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47 | Actions/ActionRegistry.cpp \
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48 | Actions/ActionSequence.cpp \
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49 | Actions/ActionTraits.cpp \
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50 | Actions/ErrorAction.cpp \
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51 | Actions/MakroAction.cpp \
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52 | Actions/ManipulateAtomsProcess.cpp \
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53 | Actions/MethodAction.cpp \
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54 | Actions/OptionRegistry.cpp \
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55 | Actions/OptionTrait.cpp \
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56 | Actions/Process.cpp
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57 |
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58 | ACTIONSHEADER = \
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59 | Actions/Action.hpp \
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60 | Actions/ActionHistory.hpp \
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61 | Actions/ActionRegistry.hpp \
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62 | Actions/ActionSequence.hpp \
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63 | Actions/ActionTraits.hpp \
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64 | Actions/Calculation.hpp \
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65 | Actions/Calculation_impl.hpp \
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66 | Actions/ErrorAction.hpp \
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67 | Actions/MakroAction.hpp \
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68 | Actions/ManipulateAtomsProcess.hpp \
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69 | Actions/MethodAction.hpp \
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70 | Actions/OptionRegistry.hpp \
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71 | Actions/OptionTrait.hpp \
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72 | Actions/Process.hpp
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73 |
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74 |
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75 | DESCRIPTORSOURCE = \
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76 | Descriptors/AtomDescriptor.cpp \
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77 | Descriptors/AtomIdDescriptor.cpp \
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78 | Descriptors/AtomOfMoleculeSelectionDescriptor.cpp \
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79 | Descriptors/AtomSelectionDescriptor.cpp \
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80 | Descriptors/AtomShapeDescriptor.cpp \
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81 | Descriptors/AtomTypeDescriptor.cpp \
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82 | Descriptors/MoleculeDescriptor.cpp \
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83 | Descriptors/MoleculeFormulaDescriptor.cpp \
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84 | Descriptors/MoleculeIdDescriptor.cpp \
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85 | Descriptors/MoleculeNameDescriptor.cpp \
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86 | Descriptors/MoleculeOfAtomSelectionDescriptor.cpp \
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87 | Descriptors/MoleculeOrderDescriptor.cpp \
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88 | Descriptors/MoleculePtrDescriptor.cpp \
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89 | Descriptors/MoleculeSelectionDescriptor.cpp
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90 |
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91 |
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92 | DESCRIPTORHEADER = \
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93 | Descriptors/AtomDescriptor.hpp \
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94 | Descriptors/AtomIdDescriptor.hpp \
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95 | Descriptors/AtomOfMoleculeSelectionDescriptor.hpp \
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96 | Descriptors/AtomSelectionDescriptor.hpp \
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97 | Descriptors/AtomShapeDescriptor.hpp \
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98 | Descriptors/AtomTypeDescriptor.hpp \
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99 | Descriptors/MoleculeDescriptor.hpp \
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100 | Descriptors/MoleculeFormulaDescriptor.hpp \
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101 | Descriptors/MoleculeIdDescriptor.hpp \
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102 | Descriptors/MoleculeNameDescriptor.hpp \
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103 | Descriptors/MoleculeOfAtomSelectionDescriptor.hpp \
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104 | Descriptors/MoleculeOrderDescriptor.hpp \
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105 | Descriptors/MoleculePtrDescriptor.hpp \
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106 | Descriptors/MoleculeSelectionDescriptor.hpp
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107 |
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108 | DESCRIPTORIMPLHEADER = \
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109 | Descriptors/AtomDescriptor_impl.hpp \
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110 | Descriptors/AtomIdDescriptor_impl.hpp \
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111 | Descriptors/AtomOfMoleculeSelectionDescriptor_impl.hpp \
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112 | Descriptors/AtomSelectionDescriptor_impl.hpp \
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113 | Descriptors/AtomShapeDescriptor_impl.hpp \
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114 | Descriptors/AtomTypeDescriptor_impl.hpp \
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115 | Descriptors/MoleculeDescriptor_impl.hpp \
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116 | Descriptors/MoleculeFormulaDescriptor_impl.hpp \
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117 | Descriptors/MoleculeIdDescriptor_impl.hpp \
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118 | Descriptors/MoleculeNameDescriptor_impl.hpp \
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119 | Descriptors/MoleculeOfAtomSelectionDescriptor_impl.hpp \
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120 | Descriptors/MoleculeOrderDescriptor_impl.hpp \
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121 | Descriptors/MoleculePtrDescriptor_impl.hpp \
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122 | Descriptors/MoleculeSelectionDescriptor_impl.hpp
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123 |
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124 | RANDOMSOURCE = \
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125 | RandomNumbers/RandomNumberDistributionFactory.cpp \
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126 | RandomNumbers/RandomNumberEngineFactory.cpp \
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127 | RandomNumbers/RandomNumberGeneratorFactory.cpp
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128 |
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129 | RANDOMHEADER = \
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130 | RandomNumbers/RandomNumberDistribution.hpp \
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131 | RandomNumbers/RandomNumberDistribution_Creator.hpp \
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132 | RandomNumbers/RandomNumberDistribution_Encapsulation.hpp \
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133 | RandomNumbers/RandomNumberDistributionFactory.hpp \
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134 | RandomNumbers/RandomNumberEngine.hpp \
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135 | RandomNumbers/RandomNumberEngine_Creator.hpp \
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136 | RandomNumbers/RandomNumberEngine_Encapsulation.hpp \
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137 | RandomNumbers/RandomNumberEngineFactory.hpp \
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138 | RandomNumbers/RandomNumberGenerator.hpp \
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139 | RandomNumbers/RandomNumberGenerator_Creator.hpp \
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140 | RandomNumbers/RandomNumberGenerator_Encapsulation.hpp \
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141 | RandomNumbers/RandomNumberGeneratorFactory.hpp \
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142 | RandomNumbers/TemplatePowerSetGenerator.hpp \
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143 | RandomNumbers/EmptyPrototypeTable.hpp
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144 |
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145 | THERMOSTATSOURCE = \
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146 | Thermostats/Berendsen.cpp \
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147 | Thermostats/GaussianThermostat.cpp \
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148 | Thermostats/Langevin.cpp \
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149 | Thermostats/NoseHoover.cpp \
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150 | Thermostats/NoThermostat.cpp \
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151 | Thermostats/Thermostat.cpp \
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152 | Thermostats/Woodcock.cpp
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153 |
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154 | THERMOSTATHEADER = \
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155 | Thermostats/Berendsen.hpp \
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156 | Thermostats/GaussianThermostat.hpp \
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157 | Thermostats/Langevin.hpp \
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158 | Thermostats/NoseHoover.hpp \
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159 | Thermostats/NoThermostat.hpp \
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160 | Thermostats/Thermostat.hpp \
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161 | Thermostats/Woodcock.hpp
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162 |
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163 | TESSELATIONSOURCE = \
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164 | BoundaryLineSet.cpp \
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165 | BoundaryPointSet.cpp \
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166 | BoundaryPolygonSet.cpp \
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167 | BoundaryTriangleSet.cpp \
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168 | CandidateForTesselation.cpp \
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169 | PointCloud.cpp \
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170 | tesselation.cpp \
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171 | tesselationhelpers.cpp \
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172 | TesselPoint.cpp
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173 |
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174 | TESSELATIONHEADER = \
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175 | BoundaryLineSet.hpp \
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176 | BoundaryPointSet.hpp \
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177 | BoundaryPolygonSet.hpp \
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178 | BoundaryTriangleSet.hpp \
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179 | CandidateForTesselation.hpp \
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180 | PointCloud.hpp \
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181 | tesselation.hpp \
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182 | tesselationhelpers.hpp \
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183 | TesselPoint.hpp
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184 |
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185 | MOLECUILDERSOURCE = \
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186 | ${ANALYSISSOURCE} \
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187 | ${ACTIONSSOURCE} \
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188 | ${ATOMSOURCE} \
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189 | ${DESCRIPTORSOURCE} \
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190 | ${RANDOMSOURCE} \
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191 | ${THERMOSTATSOURCE} \
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192 | ${TESSELATIONSOURCE} \
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193 | Helpers/defs.cpp \
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194 | Helpers/helpers.cpp \
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195 | bond.cpp \
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196 | bondgraph.cpp \
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197 | boundary.cpp \
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198 | Box.cpp \
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199 | config.cpp \
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200 | ConfigFileBuffer.cpp \
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201 | element.cpp \
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202 | elements_db.cpp \
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203 | ellipsoid.cpp \
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204 | Formula.cpp \
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205 | graph.cpp \
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206 | linkedcell.cpp \
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207 | moleculelist.cpp \
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208 | molecule.cpp \
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209 | molecule_dynamics.cpp \
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210 | molecule_fragmentation.cpp \
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211 | molecule_geometry.cpp \
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212 | molecule_graph.cpp \
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213 | molecule_pointcloud.cpp \
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214 | parser.cpp \
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215 | periodentafel.cpp \
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216 | ThermoStatContainer.cpp \
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217 | triangleintersectionlist.cpp \
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218 | UIElements/UIFactory.cpp \
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219 | World.cpp
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220 |
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221 | MOLECUILDERHEADER = \
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222 | ${ANALYSISHEADER} \
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223 | ${ACTIONSHEADER} \
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224 | ${ATOMHEADER} \
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225 | ${DESCRIPTORHEADER} \
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226 | ${DESCRIPTORIMPLHEADER} \
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227 | ${RANDOMSOURCE} \
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228 | ${THERMOSTATHEADER} \
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229 | ${TESSELATIONHEADER} \
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230 | Helpers/defs.hpp \
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231 | Helpers/fast_functions.hpp \
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232 | Helpers/helpers.hpp \
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233 | bond.hpp \
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234 | bondgraph.hpp \
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235 | boundary.hpp \
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236 | Box.hpp \
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237 | config.hpp \
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238 | ConfigFileBuffer.hpp \
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239 | element.hpp \
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240 | elements_db.hpp \
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241 | ellipsoid.hpp \
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242 | Formula.hpp \
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243 | graph.hpp \
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244 | linkedcell.hpp \
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245 | lists.hpp \
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246 | molecule.hpp \
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247 | parser.hpp \
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248 | periodentafel.hpp \
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249 | ThermoStatContainer.hpp \
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250 | triangleintersectionlist.hpp \
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251 | UIElements/UIFactory.hpp \
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252 | World.hpp
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253 |
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254 | lib_LTLIBRARIES = libMolecuilder.la
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255 | libMolecuilder_la_includedir = $(includedir)/MoleCuilder/
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256 | libMolecuilder_la_LIBADD = \
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257 | LinearAlgebra/libMolecuilderLinearAlgebra.la \
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258 | ${CodePatterns_LIBS} \
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259 | ${BOOST_PROGRAM_OPTIONS_LIB}
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260 |
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261 | nobase_libMolecuilder_la_include_HEADERS = ${MOLECUILDERHEADER}
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262 |
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263 | ## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
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264 | ## target. Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
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265 | ## will therefore be treated as if it were literally part of the target name,
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266 | ## and the variable name derived from that.
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267 | ## The file extension .cc is recognized by Automake, and makes it produce
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268 | ## rules which invoke the C++ compiler to produce a libtool object file (.lo)
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269 | ## from each source file. Note that it is not necessary to list header files
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270 | ## which are already listed elsewhere in a _HEADERS variable assignment.
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271 | libMolecuilder_la_SOURCES = ${MOLECUILDERSOURCE} $(srcdir)/version.c
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272 |
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273 | ## Instruct libtool to include ABI version information in the generated shared
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274 | ## library file (.so). The library ABI version is defined in configure.ac, so
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275 | ## that all version information is kept in one place.
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276 | libMolecuilder_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
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277 |
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278 | ## The generated configuration header is installed in its own subdirectory of
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279 | ## $(libdir). The reason for this is that the configuration information put
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280 | ## into this header file describes the target platform the installed library
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281 | ## has been built for. Thus the file must not be installed into a location
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282 | ## intended for architecture-independent files, as defined by the Filesystem
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283 | ## Hierarchy Standard (FHS).
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284 | ## The nodist_ prefix instructs Automake to not generate rules for including
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285 | ## the listed files in the distribution on 'make dist'. Files that are listed
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286 | ## in _HEADERS variables are normally included in the distribution, but the
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287 | ## configuration header file is generated at configure time and should not be
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288 | ## shipped with the source tarball.
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289 | libMolecuilder_la_libincludedir = $(libdir)/MoleCuilder/include
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290 | nodist_libMolecuilder_la_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
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291 |
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292 | ## Install the generated pkg-config file (.pc) into the expected location for
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293 | ## architecture-dependent package configuration information. Occasionally,
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294 | ## pkg-config files are also used for architecture-independent data packages,
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295 | ## in which case the correct install location would be $(datadir)/pkgconfig.
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296 | pkgconfigdir = $(libdir)/pkgconfig
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297 | pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
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298 |
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299 |
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300 | BOOST_LIB = $(BOOST_LDFLAGS) $(BOOST_MPL_LIB) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_FILESYSTEM_LIB) $(BOOST_SYSTEM_LIB) $(BOOST_THREAD_LIB)
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301 | INCLUDES = -I$(top_srcdir)/src/unittests -I$(top_srcdir)/src/Actions -I$(top_srcdir)/src/UIElements
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302 |
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303 | noinst_LIBRARIES = libmenu.a
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304 | bin_PROGRAMS = molecuilder molecuildergui joiner analyzer SubspaceFactorizer
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305 | EXTRA_PROGRAMS = unity
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306 |
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307 | molecuilderdir = ${bindir}
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308 |
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309 | libmenu_a_SOURCES = ${UISOURCE} ${UIHEADER}
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310 |
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311 | molecuilder_DATA = elements.db valence.db orbitals.db Hbonddistance.db Hbondangle.db
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312 |
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313 | SubspaceFactorizer_CXXFLAGS = $(BOOST_CPPFLAGS)
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314 | SubspaceFactorizer_SOURCES = SubspaceFactorizer.cpp Helpers/defs.cpp Helpers/defs.hpp Helpers/helpers.cpp Helpers/helpers.hpp
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315 | SubspaceFactorizer_LDADD = \
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316 | LinearAlgebra/libMolecuilderLinearAlgebra.la \
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317 | Exceptions/libMolecuilderExceptions.la \
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318 | ${CodePatterns_LIBS} \
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319 | $(GSLLIB) \
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320 | $(BOOST_LIB)
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321 |
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322 | molecuilder_CXXFLAGS = $(BOOST_CPPFLAGS)
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323 | #molecuilder_CXXFLAGS += -DNO_CACHING
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324 | molecuilder_LDFLAGS = $(BOOST_LIB)
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325 | molecuilder_SOURCES = builder.cpp builder_init.cpp builder_init.hpp
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326 | molecuilder_LDADD = \
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327 | UIElements/libMolecuilderUI.la \
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328 | Actions/libMolecuilderActions.la \
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329 | libMolecuilder.la \
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330 | Parser/libMolecuilderParser.la \
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331 | Shapes/libMolecuilderShapes.la \
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332 | LinearAlgebra/libMolecuilderLinearAlgebra.la \
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333 | Exceptions/libMolecuilderExceptions.la \
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334 | ${CodePatterns_LIBS} \
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335 | $(BOOST_LIB)
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336 |
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337 | #Stuff for building the GUI using Qt
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338 | molecuildergui_SOURCES = builder.cpp builder_init.cpp builder_init.hpp
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339 | molecuildergui_CXXFLAGS = $(BOOST_CPPFLAGS) -DUSE_GUI_QT
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340 | molecuildergui_LDFLAGS = $(BOOST_LIB)
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341 |
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342 | unity_SOURCES = unity.cpp
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343 | unity_LDADD = $(BOOST_LIB)
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344 |
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345 | molecuildergui_LDADD = \
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346 | UIElements/libMolecuilderUI.la \
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347 | UIElements/libMolecuilderQtUI.la \
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348 | Actions/libMolecuilderActions.la \
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349 | libMolecuilder.la \
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350 | Parser/libMolecuilderParser.la \
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351 | Shapes/libMolecuilderShapes.la \
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352 | LinearAlgebra/libMolecuilderLinearAlgebra.la \
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353 | Exceptions/libMolecuilderExceptions.la \
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354 | ${CodePatterns_LIBS} \
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355 | $(BOOST_LIB) \
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356 | ${GUI_LIBS}
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357 |
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358 | joiner_SOURCES = joiner.cpp datacreator.cpp datacreator.hpp periodentafel.hpp
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359 | joiner_LDADD = \
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360 | UIElements/libMolecuilderUI.la \
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361 | Actions/libMolecuilderActions.la \
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362 | libMolecuilder.la \
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363 | Parser/libMolecuilderParser.la \
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364 | Shapes/libMolecuilderShapes.la \
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365 | LinearAlgebra/libMolecuilderLinearAlgebra.la \
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366 | Exceptions/libMolecuilderExceptions.la \
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367 | ${CodePatterns_LIBS} \
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368 | $(BOOST_LIB)
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369 |
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370 | analyzer_SOURCES = analyzer.cpp datacreator.cpp periodentafel.hpp datacreator.hpp
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371 | analyzer_LDADD = \
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372 | UIElements/libMolecuilderUI.la \
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373 | Actions/libMolecuilderActions.la \
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374 | libMolecuilder.la \
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375 | Parser/libMolecuilderParser.la \
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376 | Shapes/libMolecuilderShapes.la \
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377 | LinearAlgebra/libMolecuilderLinearAlgebra.la \
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378 | Exceptions/libMolecuilderExceptions.la \
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379 | ${CodePatterns_LIBS} \
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380 | $(BOOST_LIB)
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381 |
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382 | #EXTRA_DIST = ${molecuilder_DATA}
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383 |
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384 | FORCE:
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385 | $(srcdir)/.git-version: FORCE
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386 | @if (test -d $(top_srcdir)/.git && cd $(srcdir) \
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387 | && { git describe --dirty --always || git describe; } ) > .git-version-t 2>/dev/null \
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388 | && ! diff .git-version-t $(srcdir)/.git-version >/dev/null 2>&1; then \
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389 | mv -f .git-version-t $(srcdir)/.git-version; \
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390 | else \
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391 | rm -f .git-version-t; \
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392 | fi
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393 |
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394 | EXTRA_DIST = $(srcdir)/.git-version
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395 |
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396 | $(srcdir)/version.c: $(srcdir)/.git-version
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397 | echo "const char *MOLECUILDERVERSION = \"$(PACKAGE_NAME) version "`cat $(srcdir)/.git-version`"\";" > $@
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398 |
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399 |
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400 | unity.cpp: ${MOLECUILDERSOURCE} ${MOLECUILDERHEADER}
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401 | echo "#include \"$(srcdir)/Helpers/MemDebug.cpp\"" > unity.cpp; \
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402 | list='$(MOLECUILDERSOURCE)'; for file in $$list; do \
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403 | echo "#include \"$(srcdir)/$$file\"" >> unity.cpp; \
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404 | done; \
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405 | subdirs='$(SUBDIRS)';for directory in $$subdirs; do\
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406 | olddir=$$PWD;\
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407 | cd $$directory && make unity.cpp;\
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408 | cd $$olddir;\
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409 | echo "#include \"$$directory/unity.cpp\"" >> unity.cpp;\
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410 | done;\
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411 | echo "#include \"$(srcdir)/builder.cpp\"" >> unity.cpp;
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412 | echo "#include \"$(srcdir)/version.c\"" >> unity.cpp;
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413 |
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414 | MOSTLYCLEANFILES = unity.cpp
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415 |
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