| 1 | # PLEASE adhere to the alphabetical ordering in this Makefile!
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| 2 | # Also indentation by a single tab
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| 3 |
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| 4 | MOSTLYCLEANFILES =
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| 5 | lib_LTLIBRARIES =
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| 6 | noinst_LTLIBRARIES =
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| 7 | bin_PROGRAMS =
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| 8 |
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| 9 | include Actions/Makefile.am
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| 10 | include Analysis/Makefile.am
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| 11 | include Element/Makefile.am
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| 12 | include Graph/Makefile.am
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| 13 | include Helpers/Makefile.am
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| 14 | include Fragmentation/Makefile.am
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| 15 | include Parser/Makefile.am
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| 16 | include RandomNumbers/Makefile.am
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| 17 | include Shapes/Makefile.am
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| 18 | include UIElements/Makefile.am
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| 19 |
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| 20 | AM_LDFLAGS = -ldl ${BOOST_LDFLAGS}
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| 21 | AM_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
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| 22 |
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| 23 | ATOMSOURCE = \
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| 24 | atom.cpp \
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| 25 | AtomicInfo.cpp \
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| 26 | atom_atominfo.cpp \
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| 27 | atom_bondedparticle.cpp \
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| 28 | atom_bondedparticleinfo.cpp \
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| 29 | atom_graphnode.cpp \
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| 30 | atom_graphnodeinfo.cpp \
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| 31 | atom_observable.cpp \
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| 32 | atom_particleinfo.cpp
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| 33 | ATOMHEADER = \
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| 34 | atom.hpp \
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| 35 | atom_atominfo.hpp \
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| 36 | atom_bondedparticle.hpp \
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| 37 | atom_bondedparticleinfo.hpp \
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| 38 | atom_graphnode.hpp \
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| 39 | atom_graphnodeinfo.hpp \
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| 40 | atom_observable.hpp \
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| 41 | atom_particleinfo.hpp \
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| 42 | AtomicInfo.hpp \
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| 43 | AtomSet.hpp
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| 44 |
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| 45 | BONDSOURCE = \
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| 46 | Bond/bond.cpp \
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| 47 | Bond/GraphEdge.cpp
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| 48 |
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| 49 | BONDHEADER = \
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| 50 | Bond/bond.hpp \
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| 51 | Bond/GraphEdge.hpp
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| 52 |
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| 53 | DESCRIPTORSOURCE = \
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| 54 | Descriptors/AtomDescriptor.cpp \
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| 55 | Descriptors/AtomIdDescriptor.cpp \
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| 56 | Descriptors/AtomOfMoleculeSelectionDescriptor.cpp \
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| 57 | Descriptors/AtomSelectionDescriptor.cpp \
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| 58 | Descriptors/AtomShapeDescriptor.cpp \
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| 59 | Descriptors/AtomTypeDescriptor.cpp \
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| 60 | Descriptors/MoleculeDescriptor.cpp \
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| 61 | Descriptors/MoleculeFormulaDescriptor.cpp \
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| 62 | Descriptors/MoleculeIdDescriptor.cpp \
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| 63 | Descriptors/MoleculeNameDescriptor.cpp \
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| 64 | Descriptors/MoleculeOfAtomSelectionDescriptor.cpp \
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| 65 | Descriptors/MoleculeOrderDescriptor.cpp \
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| 66 | Descriptors/MoleculePtrDescriptor.cpp \
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| 67 | Descriptors/MoleculeSelectionDescriptor.cpp
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| 68 |
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| 69 |
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| 70 | DESCRIPTORHEADER = \
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| 71 | Descriptors/AtomDescriptor.hpp \
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| 72 | Descriptors/AtomIdDescriptor.hpp \
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| 73 | Descriptors/AtomOfMoleculeSelectionDescriptor.hpp \
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| 74 | Descriptors/AtomSelectionDescriptor.hpp \
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| 75 | Descriptors/AtomShapeDescriptor.hpp \
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| 76 | Descriptors/AtomTypeDescriptor.hpp \
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| 77 | Descriptors/DescriptorBase.hpp \
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| 78 | Descriptors/MoleculeDescriptor.hpp \
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| 79 | Descriptors/MoleculeFormulaDescriptor.hpp \
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| 80 | Descriptors/MoleculeIdDescriptor.hpp \
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| 81 | Descriptors/MoleculeNameDescriptor.hpp \
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| 82 | Descriptors/MoleculeOfAtomSelectionDescriptor.hpp \
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| 83 | Descriptors/MoleculeOrderDescriptor.hpp \
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| 84 | Descriptors/MoleculePtrDescriptor.hpp \
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| 85 | Descriptors/MoleculeSelectionDescriptor.hpp \
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| 86 | Descriptors/SelectiveIterator.hpp
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| 87 |
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| 88 | DESCRIPTORIMPLHEADER = \
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| 89 | Descriptors/AtomDescriptor_impl.hpp \
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| 90 | Descriptors/AtomIdDescriptor_impl.hpp \
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| 91 | Descriptors/AtomOfMoleculeSelectionDescriptor_impl.hpp \
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| 92 | Descriptors/AtomSelectionDescriptor_impl.hpp \
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| 93 | Descriptors/AtomShapeDescriptor_impl.hpp \
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| 94 | Descriptors/AtomTypeDescriptor_impl.hpp \
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| 95 | Descriptors/DescriptorBase_impl.hpp \
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| 96 | Descriptors/MoleculeDescriptor_impl.hpp \
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| 97 | Descriptors/MoleculeFormulaDescriptor_impl.hpp \
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| 98 | Descriptors/MoleculeIdDescriptor_impl.hpp \
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| 99 | Descriptors/MoleculeNameDescriptor_impl.hpp \
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| 100 | Descriptors/MoleculeOfAtomSelectionDescriptor_impl.hpp \
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| 101 | Descriptors/MoleculeOrderDescriptor_impl.hpp \
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| 102 | Descriptors/MoleculePtrDescriptor_impl.hpp \
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| 103 | Descriptors/MoleculeSelectionDescriptor_impl.hpp \
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| 104 | Descriptors/SelectiveIterator_impl.hpp
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| 105 |
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| 106 | DYNAMICSSOURCE = \
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| 107 | Dynamics/MinimiseConstrainedPotential.cpp
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| 108 |
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| 109 | DYNAMICSHEADER = \
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| 110 | Dynamics/LinearInterpolationBetweenSteps.hpp \
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| 111 | Dynamics/MinimiseConstrainedPotential.hpp \
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| 112 | Dynamics/OutputTemperature.hpp \
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| 113 | Dynamics/VerletForceIntegration.hpp
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| 114 |
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| 115 | THERMOSTATSOURCE = \
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| 116 | Thermostats/Berendsen.cpp \
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| 117 | Thermostats/GaussianThermostat.cpp \
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| 118 | Thermostats/Langevin.cpp \
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| 119 | Thermostats/NoseHoover.cpp \
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| 120 | Thermostats/NoThermostat.cpp \
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| 121 | Thermostats/Thermostat.cpp \
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| 122 | Thermostats/Woodcock.cpp
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| 123 |
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| 124 | THERMOSTATHEADER = \
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| 125 | Thermostats/Berendsen.hpp \
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| 126 | Thermostats/GaussianThermostat.hpp \
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| 127 | Thermostats/Langevin.hpp \
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| 128 | Thermostats/NoseHoover.hpp \
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| 129 | Thermostats/NoThermostat.hpp \
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| 130 | Thermostats/Thermostat.hpp \
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| 131 | Thermostats/Woodcock.hpp
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| 132 |
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| 133 | TESSELATIONSOURCE = \
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| 134 | Tesselation/boundary.cpp \
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| 135 | Tesselation/BoundaryLineSet.cpp \
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| 136 | Tesselation/BoundaryPointSet.cpp \
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| 137 | Tesselation/BoundaryPolygonSet.cpp \
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| 138 | Tesselation/BoundaryTriangleSet.cpp \
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| 139 | Tesselation/CandidateForTesselation.cpp \
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| 140 | Tesselation/ellipsoid.cpp \
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| 141 | Tesselation/tesselation.cpp \
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| 142 | Tesselation/tesselationhelpers.cpp \
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| 143 | Tesselation/TesselPoint.cpp \
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| 144 | Tesselation/triangleintersectionlist.cpp
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| 145 |
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| 146 | TESSELATIONHEADER = \
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| 147 | Tesselation/boundary.hpp \
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| 148 | Tesselation/BoundaryLineSet.hpp \
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| 149 | Tesselation/BoundaryMaps.hpp \
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| 150 | Tesselation/BoundaryPointSet.hpp \
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| 151 | Tesselation/BoundaryPolygonSet.hpp \
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| 152 | Tesselation/BoundaryTriangleSet.hpp \
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| 153 | Tesselation/CandidateForTesselation.hpp \
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| 154 | Tesselation/ellipsoid.hpp \
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| 155 | IPointCloud.hpp \
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| 156 | PointCloudAdaptor.hpp \
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| 157 | Tesselation/tesselation.hpp \
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| 158 | Tesselation/tesselationhelpers.hpp \
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| 159 | Tesselation/TesselPoint.hpp \
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| 160 | Tesselation/triangleintersectionlist.hpp
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| 161 |
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| 162 | MOLECUILDERSOURCE = \
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| 163 | ${ATOMSOURCE} \
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| 164 | ${BONDSOURCE} \
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| 165 | ${DESCRIPTORSOURCE} \
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| 166 | ${DYNAMICSSOURCE} \
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| 167 | ${THERMOSTATSOURCE} \
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| 168 | ${TESSELATIONSOURCE} \
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| 169 | Box.cpp \
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| 170 | config.cpp \
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| 171 | ConfigFileBuffer.cpp \
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| 172 | Formula.cpp \
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| 173 | graph.cpp \
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| 174 | linkedcell.cpp \
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| 175 | moleculelist.cpp \
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| 176 | molecule.cpp \
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| 177 | molecule_fragmentation.cpp \
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| 178 | molecule_geometry.cpp \
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| 179 | molecule_graph.cpp \
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| 180 | ThermoStatContainer.cpp \
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| 181 | UIElements/UIFactory.cpp \
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| 182 | version.c \
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| 183 | World.cpp \
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| 184 | WorldTime.cpp
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| 185 |
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| 186 | MOLECUILDERHEADER = \
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| 187 | ${ATOMHEADER} \
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| 188 | ${BONDHEADER} \
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| 189 | ${DESCRIPTORHEADER} \
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| 190 | ${DESCRIPTORIMPLHEADER} \
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| 191 | ${DYNAMICSHEADER} \
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| 192 | ${THERMOSTATHEADER} \
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| 193 | ${TESSELATIONHEADER} \
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| 194 | Box.hpp \
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| 195 | config.hpp \
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| 196 | ConfigFileBuffer.hpp \
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| 197 | Formula.hpp \
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| 198 | graph.hpp \
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| 199 | linkedcell.hpp \
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| 200 | molecule.hpp \
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| 201 | ThermoStatContainer.hpp \
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| 202 | types.hpp \
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| 203 | UIElements/UIFactory.hpp \
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| 204 | version.h \
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| 205 | World.hpp \
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| 206 | World_calculations.hpp \
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| 207 | WorldTime.hpp
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| 208 |
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| 209 | noinst_LTLIBRARIES += libMolecuilder.la
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| 210 | libMolecuilder_la_includedir = $(includedir)/MoleCuilder/
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| 211 |
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| 212 | nobase_libMolecuilder_la_include_HEADERS = ${MOLECUILDERHEADER}
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| 213 |
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| 214 | ## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
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| 215 | ## target. Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
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| 216 | ## will therefore be treated as if it were literally part of the target name,
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| 217 | ## and the variable name derived from that.
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| 218 | ## The file extension .cc is recognized by Automake, and makes it produce
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| 219 | ## rules which invoke the C++ compiler to produce a libtool object file (.lo)
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| 220 | ## from each source file. Note that it is not necessary to list header files
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| 221 | ## which are already listed elsewhere in a _HEADERS variable assignment.
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| 222 | libMolecuilder_la_SOURCES = ${MOLECUILDERSOURCE}
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| 223 |
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| 224 | ## Instruct libtool to include ABI version information in the generated shared
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| 225 | ## library file (.so). The library ABI version is defined in configure.ac, so
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| 226 | ## that all version information is kept in one place.
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| 227 | #libMolecuilder_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
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| 228 |
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| 229 | ## The generated configuration header is installed in its own subdirectory of
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| 230 | ## $(libdir). The reason for this is that the configuration information put
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| 231 | ## into this header file describes the target platform the installed library
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| 232 | ## has been built for. Thus the file must not be installed into a location
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| 233 | ## intended for architecture-independent files, as defined by the Filesystem
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| 234 | ## Hierarchy Standard (FHS).
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| 235 | ## The nodist_ prefix instructs Automake to not generate rules for including
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| 236 | ## the listed files in the distribution on 'make dist'. Files that are listed
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| 237 | ## in _HEADERS variables are normally included in the distribution, but the
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| 238 | ## configuration header file is generated at configure time and should not be
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| 239 | ## shipped with the source tarball.
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| 240 | libMolecuilder_la_libincludedir = $(libdir)/MoleCuilder/include
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| 241 | nodist_libMolecuilder_la_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
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| 242 |
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| 243 | ## Install the generated pkg-config file (.pc) into the expected location for
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| 244 | ## architecture-dependent package configuration information. Occasionally,
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| 245 | ## pkg-config files are also used for architecture-independent data packages,
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| 246 | ## in which case the correct install location would be $(datadir)/pkgconfig.
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| 247 | pkgconfigdir = $(libdir)/pkgconfig
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| 248 | pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
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| 249 |
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| 250 |
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| 251 | INCLUDES = -I$(top_srcdir)/src/unittests -I$(top_srcdir)/src/Actions -I$(top_srcdir)/src/UIElements -I$(top_srcdir)/LinearAlgebra/src
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| 252 |
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| 253 | noinst_LIBRARIES = libmenu.a
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| 254 | bin_PROGRAMS += molecuilder molecuildergui joiner analyzer
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| 255 | EXTRA_PROGRAMS = unity
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| 256 |
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| 257 | molecuilderdir = ${bindir}
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| 258 |
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| 259 | libmenu_a_SOURCES = ${UISOURCE} ${UIHEADER}
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| 260 |
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| 261 | molecuilder_DATA = Element/elements.db Element/valence.db Element/orbitals.db Element/Hbonddistance.db Element/Hbondangle.db
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| 262 |
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| 263 | molecuilder_CXXFLAGS = $(AM_CPPFLAGS)
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| 264 | #molecuilder_CXXFLAGS += -DNO_CACHING
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| 265 | molecuilder_LDFLAGS = $(AM_LDFLAGS) $(BOOST_FILESYSTEM_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) $(BOOST_RANDOM_LDFLAGS) $(BOOST_SYSTEM_LDFLAGS) $(BOOST_THREAD_LDFLAGS)
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| 266 | molecuilder_SOURCES = builder.cpp builder_init.cpp builder_init.hpp
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| 267 | molecuilder_LDADD = \
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| 268 | libMolecuilderUI.la \
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| 269 | $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
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| 270 | ${CodePatterns_LIBS} \
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| 271 | $(BOOST_THREAD_LIBS) \
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| 272 | $(BOOST_PROGRAM_OPTIONS_LIBS) \
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| 273 | $(BOOST_RANDOM_LIBS) \
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| 274 | $(BOOST_SYSTEM_LIBS) \
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| 275 | $(BOOST_FILESYSTEM_LIBS)
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| 276 |
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| 277 | #Stuff for building the GUI using Qt
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| 278 | molecuildergui_SOURCES = builder.cpp builder_init.cpp builder_init.hpp
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| 279 | molecuildergui_CXXFLAGS = $(AM_CPPFLAGS) -DUSE_GUI_QT
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| 280 | molecuildergui_LDFLAGS = $(AM_LDFLAGS) $(BOOST_FILESYSTEM_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) $(BOOST_SYSTEM_LDFLAGS) $(BOOST_THREAD_LDFLAGS)
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| 281 | molecuildergui_LDADD = \
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| 282 | libMolecuilderQtUI.la \
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| 283 | libMolecuilderUI.la \
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| 284 | $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
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| 285 | ${CodePatterns_LIBS} \
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| 286 | $(BOOST_THREAD_LIBS) \
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| 287 | $(BOOST_PROGRAM_OPTIONS_LIBS) \
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| 288 | $(BOOST_RANDOM_LIBS) \
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| 289 | $(BOOST_SYSTEM_LIBS) \
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| 290 | $(BOOST_FILESYSTEM_LIBS) \
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| 291 | $(GUI_LIBS)
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| 292 |
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| 293 | joiner_SOURCES = Fragmentation/joiner.cpp Fragmentation/datacreator.cpp Fragmentation/datacreator.hpp
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| 294 | joiner_LDADD = \
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| 295 | libMolecuilderFragmentation.la \
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| 296 | libMolecuilderHelpers.la \
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| 297 | libMolecuilderElement.la \
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| 298 | $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
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| 299 | ${CodePatterns_LIBS} \
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| 300 | $(BOOST_THREAD_LIBS)
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| 301 |
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| 302 | analyzer_SOURCES = Fragmentation/analyzer.cpp Fragmentation/datacreator.cpp Fragmentation/datacreator.hpp
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| 303 | analyzer_LDADD = \
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| 304 | libMolecuilderFragmentation.la \
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| 305 | libMolecuilderHelpers.la \
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| 306 | libMolecuilderElement.la \
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| 307 | $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
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| 308 | ${CodePatterns_LIBS} \
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| 309 | $(BOOST_THREAD_LIBS)
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| 310 |
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| 311 | unity_SOURCES = unity.cpp
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| 312 | unity_LDADD = \
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| 313 | ${CodePatterns_LIBS} \
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| 314 | $(BOOST_THREAD_LIBS) \
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| 315 | $(BOOST_PROGRAM_OPTIONS_LIBS) \
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| 316 | $(BOOST_RANDOM_LIBS) \
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| 317 | $(BOOST_SYSTEM_LIBS) \
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| 318 | $(BOOST_FILESYSTEM_LIBS)
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| 319 |
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| 320 |
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| 321 | FORCE:
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| 322 | $(srcdir)/.git-version: FORCE
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| 323 | @if (test -d $(top_srcdir)/.git && cd $(srcdir) \
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| 324 | && { git describe --dirty --always || git describe; } ) > .git-version-t 2>/dev/null \
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| 325 | && ! diff .git-version-t $(srcdir)/.git-version >/dev/null 2>&1; then \
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| 326 | mv -f .git-version-t $(srcdir)/.git-version; \
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| 327 | else \
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| 328 | rm -f .git-version-t; \
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| 329 | fi
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| 330 |
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| 331 | EXTRA_DIST = $(srcdir)/.git-version $(molecuilder_DATA)
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| 332 |
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| 333 | $(srcdir)/version.c: $(srcdir)/.git-version
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| 334 | echo "const char *MOLECUILDERVERSION = \"$(PACKAGE_NAME) version "`cat $(srcdir)/.git-version`"\";" > $@
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| 335 |
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| 336 |
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| 337 | unity.cpp: ${MOLECUILDERSOURCE} ${MOLECUILDERHEADER}
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| 338 | echo "#include \"$(srcdir)/Helpers/MemDebug.cpp\"" > unity.cpp; \
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| 339 | list='$(MOLECUILDERSOURCE)'; for file in $$list; do \
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| 340 | echo "#include \"$(srcdir)/$$file\"" >> unity.cpp; \
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| 341 | done; \
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| 342 | subdirs='$(SUBDIRS)';for directory in $$subdirs; do\
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| 343 | olddir=$$PWD;\
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| 344 | cd $$directory && make unity.cpp;\
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| 345 | cd $$olddir;\
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| 346 | echo "#include \"$$directory/unity.cpp\"" >> unity.cpp;\
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| 347 | done;\
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| 348 | echo "#include \"$(srcdir)/builder.cpp\"" >> unity.cpp;
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| 349 | echo "#include \"$(srcdir)/version.c\"" >> unity.cpp;
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| 350 |
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| 351 | MOSTLYCLEANFILES += unity.cpp
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| 352 |
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