source: src/Makefile.am@ 26b4d62

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 26b4d62 was cc6e5c, checked in by Frederik Heber <heber@…>, 11 years ago

Replaced Reactions by simple function exported to pyMoleCuilder.

  • Reactions are a bad idea from the start, calculations do not need to be undone. Hence, why make them into an Action that is specifically undoable?
  • removed all Reaction..-related files.
  • removed ActinQueue::getLastAction().
  • removed CalculateBoundingBoxAction, CalculateCellVolumeAction, and CalculateMolarMassAction, replaced by small function in Python folder.
  • TESTFIX: removed associated regression tests in Analysis.
  • modified boxmaker.py.in as names of functions changed.
  • removed Actions/pyMoleCuilder.cpp, is redunant with PythonScripting_impl.hpp.
  • Property mode set to 100644
File size: 17.2 KB
RevLine 
[efc3cb]1# PLEASE adhere to the alphabetical ordering in this Makefile!
2# Also indentation by a single tab
3
[455573]4MOSTLYCLEANFILES =
5lib_LTLIBRARIES =
6noinst_LTLIBRARIES =
[2d31e1]7pyexec_LTLIBRARIES =
[aee2da]8BUILT_SOURCES =
[bd8788]9bin_PROGRAMS =
[fd4d5e]10EXTRA_DIST =
[455573]11
12include Actions/Makefile.am
[9b5a2c]13include Analysis/Makefile.am
[6f0841]14include Atom/Makefile.am
[3bdb6d]15include Element/Makefile.am
[0d57cbe]16include Filling/Makefile.am
[d9a032]17include Fragmentation/Makefile.am
[fbf143]18include Fragmentation/Summation/Containers/Makefile.am
19include Fragmentation/Summation/Converter/Makefile.am
[e920061]20include Fragmentation/Summation/Makefile.am
[fbf143]21include Fragmentation/Summation/SetValues/Makefile.am
[66cfc7]22include FunctionApproximation/Makefile.am
[455573]23include Graph/Makefile.am
[2fadb6f]24include Helpers/Makefile.am
[004d5c]25
26if CONDJOBMARKET
[ffe057]27include Fragmentation/Automation/Makefile.am
[cc5db5]28include Jobs/Makefile.am
[004d5c]29endif
30
[7e3f11a]31if CONDPYTHON
32include Python/Makefile.am
33endif
34
[91f592]35include LinkedCell/Makefile.am
[8453b3]36include Parameters/Makefile.am
[455573]37include Parser/Makefile.am
[6bb72a]38include Potentials/Makefile.am
[455573]39include RandomNumbers/Makefile.am
40include Shapes/Makefile.am
41include UIElements/Makefile.am
[5079a0]42
[a10cc0]43AM_LDFLAGS = -ldl ${BOOST_LDFLAGS} ${CodePatterns_LDFLAGS}
[a0064e]44AM_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
[d5240d]45
[129204]46BONDSOURCE = \
47 Bond/bond.cpp \
[3f7587]48 Bond/bond_observable.cpp \
[af9be32]49 Bond/BondInfo.cpp \
[129204]50 Bond/GraphEdge.cpp
51
52BONDHEADER = \
53 Bond/bond.hpp \
[3f7587]54 Bond/bond_observable.hpp \
[af9be32]55 Bond/BondInfo.hpp \
[129204]56 Bond/GraphEdge.hpp
[efc3cb]57
[c42e60]58DESCRIPTORSOURCE = \
59 Descriptors/AtomDescriptor.cpp \
[efc3cb]60 Descriptors/AtomIdDescriptor.cpp \
[b49568]61 Descriptors/AtomOfMoleculeDescriptor.cpp \
[c42e60]62 Descriptors/AtomOfMoleculeSelectionDescriptor.cpp \
[61c364]63 Descriptors/AtomOrderDescriptor.cpp \
[48dcbd]64 Descriptors/AtomSelectionDescriptor.cpp \
[6d858c]65 Descriptors/AtomShapeDescriptor.cpp \
[efc3cb]66 Descriptors/AtomTypeDescriptor.cpp \
[7afb77]67 Descriptors/AtomsWithinDistanceOfDescriptor.cpp \
[efc3cb]68 Descriptors/MoleculeDescriptor.cpp \
[6e7147]69 Descriptors/MoleculeFormulaDescriptor.cpp \
[e05826]70 Descriptors/MoleculeIdDescriptor.cpp \
[e6317b]71 Descriptors/MoleculeNameDescriptor.cpp \
[c42e60]72 Descriptors/MoleculeOfAtomSelectionDescriptor.cpp \
[92d756]73 Descriptors/MoleculeOrderDescriptor.cpp \
[cf0ca1]74 Descriptors/MoleculePtrDescriptor.cpp \
75 Descriptors/MoleculeSelectionDescriptor.cpp
[57adc7]76
[75ac0c]77
[c42e60]78DESCRIPTORHEADER = \
79 Descriptors/AtomDescriptor.hpp \
[efc3cb]80 Descriptors/AtomIdDescriptor.hpp \
[b49568]81 Descriptors/AtomOfMoleculeDescriptor.hpp \
[c42e60]82 Descriptors/AtomOfMoleculeSelectionDescriptor.hpp \
[61c364]83 Descriptors/AtomOrderDescriptor.hpp \
[48dcbd]84 Descriptors/AtomSelectionDescriptor.hpp \
[6d858c]85 Descriptors/AtomShapeDescriptor.hpp \
[efc3cb]86 Descriptors/AtomTypeDescriptor.hpp \
[7afb77]87 Descriptors/AtomsWithinDistanceOfDescriptor.hpp \
[36f507]88 Descriptors/DescriptorBase.hpp \
[efc3cb]89 Descriptors/MoleculeDescriptor.hpp \
[6e7147]90 Descriptors/MoleculeFormulaDescriptor.hpp \
[e30ce8]91 Descriptors/MoleculeIdDescriptor.hpp \
[31b09e]92 Descriptors/MoleculeNameDescriptor.hpp \
[c42e60]93 Descriptors/MoleculeOfAtomSelectionDescriptor.hpp \
[92d756]94 Descriptors/MoleculeOrderDescriptor.hpp \
[cf0ca1]95 Descriptors/MoleculePtrDescriptor.hpp \
[36f507]96 Descriptors/MoleculeSelectionDescriptor.hpp \
[feb5d0]97 Descriptors/SelectiveConstIterator.hpp \
[36f507]98 Descriptors/SelectiveIterator.hpp
[c42e60]99
100DESCRIPTORIMPLHEADER = \
101 Descriptors/AtomDescriptor_impl.hpp \
102 Descriptors/AtomIdDescriptor_impl.hpp \
[b49568]103 Descriptors/AtomOfMoleculeDescriptor_impl.hpp \
[c42e60]104 Descriptors/AtomOfMoleculeSelectionDescriptor_impl.hpp \
[61c364]105 Descriptors/AtomOrderDescriptor_impl.hpp \
[c42e60]106 Descriptors/AtomSelectionDescriptor_impl.hpp \
107 Descriptors/AtomShapeDescriptor_impl.hpp \
108 Descriptors/AtomTypeDescriptor_impl.hpp \
[7afb77]109 Descriptors/AtomsWithinDistanceOfDescriptor_impl.hpp \
[36f507]110 Descriptors/DescriptorBase_impl.hpp \
[c42e60]111 Descriptors/MoleculeDescriptor_impl.hpp \
112 Descriptors/MoleculeFormulaDescriptor_impl.hpp \
113 Descriptors/MoleculeIdDescriptor_impl.hpp \
114 Descriptors/MoleculeNameDescriptor_impl.hpp \
115 Descriptors/MoleculeOfAtomSelectionDescriptor_impl.hpp \
116 Descriptors/MoleculeOrderDescriptor_impl.hpp \
117 Descriptors/MoleculePtrDescriptor_impl.hpp \
[36f507]118 Descriptors/MoleculeSelectionDescriptor_impl.hpp \
[feb5d0]119 Descriptors/SelectiveConstIterator_impl.hpp \
[36f507]120 Descriptors/SelectiveIterator_impl.hpp
[3f9eba]121
[9e23a3]122DYNAMICSSOURCE = \
123 Dynamics/MinimiseConstrainedPotential.cpp
124
125DYNAMICSHEADER = \
[20943b]126 Dynamics/LinearInterpolationBetweenSteps.hpp \
[8009ce]127 Dynamics/MinimiseConstrainedPotential.hpp \
[435065]128 Dynamics/OutputTemperature.hpp \
129 Dynamics/VerletForceIntegration.hpp
[9e23a3]130
[194649]131THERMOSTATSOURCE = \
132 Thermostats/Berendsen.cpp \
133 Thermostats/GaussianThermostat.cpp \
134 Thermostats/Langevin.cpp \
135 Thermostats/NoseHoover.cpp \
136 Thermostats/NoThermostat.cpp \
137 Thermostats/Thermostat.cpp \
[ab26c3]138 Thermostats/ThermoStatContainer.cpp \
[194649]139 Thermostats/Woodcock.cpp
[d193a2]140
[194649]141THERMOSTATHEADER = \
142 Thermostats/Berendsen.hpp \
143 Thermostats/GaussianThermostat.hpp \
144 Thermostats/Langevin.hpp \
145 Thermostats/NoseHoover.hpp \
146 Thermostats/NoThermostat.hpp \
147 Thermostats/Thermostat.hpp \
[262ecc]148 Thermostats/ThermoStatContainer.hpp \
[194649]149 Thermostats/Woodcock.hpp
[d193a2]150
[d74077]151TESSELATIONSOURCE = \
[4c6e70]152 Tesselation/ApproximateShapeArea.cpp \
153 Tesselation/ApproximateShapeVolume.cpp \
[d127c8]154 Tesselation/boundary.cpp \
155 Tesselation/BoundaryLineSet.cpp \
156 Tesselation/BoundaryPointSet.cpp \
157 Tesselation/BoundaryPolygonSet.cpp \
158 Tesselation/BoundaryTriangleSet.cpp \
159 Tesselation/CandidateForTesselation.cpp \
160 Tesselation/ellipsoid.cpp \
161 Tesselation/tesselation.cpp \
162 Tesselation/tesselationhelpers.cpp \
163 Tesselation/triangleintersectionlist.cpp
[d74077]164
165TESSELATIONHEADER = \
[4c6e70]166 Tesselation/ApproximateShapeArea.hpp \
167 Tesselation/ApproximateShapeVolume.hpp \
[d127c8]168 Tesselation/boundary.hpp \
169 Tesselation/BoundaryLineSet.hpp \
170 Tesselation/BoundaryMaps.hpp \
171 Tesselation/BoundaryPointSet.hpp \
172 Tesselation/BoundaryPolygonSet.hpp \
173 Tesselation/BoundaryTriangleSet.hpp \
174 Tesselation/CandidateForTesselation.hpp \
175 Tesselation/ellipsoid.hpp \
176 Tesselation/tesselation.hpp \
177 Tesselation/tesselationhelpers.hpp \
178 Tesselation/triangleintersectionlist.hpp
[d74077]179
[255971]180MOLECUILDERSOURCE = \
[129204]181 ${BONDSOURCE} \
[efc3cb]182 ${DESCRIPTORSOURCE} \
[9e23a3]183 ${DYNAMICSSOURCE} \
[194649]184 ${THERMOSTATSOURCE} \
[d74077]185 ${TESSELATIONSOURCE} \
[87ec81]186 Shapes/ShapeFactory.cpp \
[5e6534]187 AtomIdSet.cpp \
[83c09a]188 Box.cpp \
[dd067a]189 Box_BoundaryConditions.cpp \
[efc3cb]190 config.cpp \
[6f43ab]191 Formula.cpp \
[d3abb1]192 MoleculeLeafClass.cpp \
[efc3cb]193 moleculelist.cpp \
194 molecule.cpp \
195 molecule_geometry.cpp \
196 molecule_graph.cpp \
[112f90]197 UIElements/UIFactory.cpp \
[9cd9ab]198 version.c \
[f649de]199 World.cpp \
200 WorldTime.cpp
[5f612ee]201
[255971]202MOLECUILDERHEADER = \
[129204]203 ${BONDHEADER} \
[efc3cb]204 ${DESCRIPTORHEADER} \
[c42e60]205 ${DESCRIPTORIMPLHEADER} \
[9e23a3]206 ${DYNAMICSHEADER} \
[194649]207 ${THERMOSTATHEADER} \
[d74077]208 ${TESSELATIONHEADER} \
[87ec81]209 Shapes/ShapeFactory.hpp \
[5e6534]210 AtomIdSet.hpp \
[83c09a]211 Box.hpp \
[dd067a]212 Box_BoundaryConditions.hpp \
[efc3cb]213 config.hpp \
[6f43ab]214 Formula.hpp \
[3e4fb6]215 IdPool.hpp \
216 IdPool_impl.hpp \
[a292f6]217 IdPool_policy.hpp \
[d3abb1]218 MoleculeLeafClass.hpp \
[262ecc]219 MoleculeListClass.hpp \
[efc3cb]220 molecule.hpp \
[36f507]221 types.hpp \
[112f90]222 UIElements/UIFactory.hpp \
[9cd9ab]223 version.h \
[6bb605]224 World.hpp \
[8544a33]225 World_calculations.hpp \
[f649de]226 WorldTime.hpp
[3027f8]227
[455573]228noinst_LTLIBRARIES += libMolecuilder.la
[e5bf2b]229libMolecuilder_la_includedir = $(includedir)/MoleCuilder/
[353326]230libMolecuilder_la_LDFLAGS = \
231 $(AM_LDFLAGS) \
232 $(CodePatterns_LDFLAGS) \
233 $(BOOST_SYSTEM_LDFLAGS) \
234 $(BOOST_THREAD_LDFLAGS)
235libMolecuilder_la_LIBADD = \
236 libMolecuilderShapes.la \
237 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
238 ${CodePatterns_LIBS} \
239 $(BOOST_SERIALIZATION_LIBS) \
240 $(BOOST_PROGRAM_OPTIONS_LIBS) \
241 $(BOOST_FILESYSTEM_LIBS) \
242 $(BOOST_SYSTEM_LIBS) \
243 $(BOOST_THREAD_LIBS)
[255971]244
[e5bf2b]245nobase_libMolecuilder_la_include_HEADERS = ${MOLECUILDERHEADER}
[255971]246
247## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
248## target. Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
249## will therefore be treated as if it were literally part of the target name,
250## and the variable name derived from that.
251## The file extension .cc is recognized by Automake, and makes it produce
252## rules which invoke the C++ compiler to produce a libtool object file (.lo)
253## from each source file. Note that it is not necessary to list header files
254## which are already listed elsewhere in a _HEADERS variable assignment.
[9cd9ab]255libMolecuilder_la_SOURCES = ${MOLECUILDERSOURCE}
[255971]256
257## Instruct libtool to include ABI version information in the generated shared
258## library file (.so). The library ABI version is defined in configure.ac, so
259## that all version information is kept in one place.
[455573]260#libMolecuilder_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
[255971]261
262## The generated configuration header is installed in its own subdirectory of
263## $(libdir). The reason for this is that the configuration information put
264## into this header file describes the target platform the installed library
265## has been built for. Thus the file must not be installed into a location
266## intended for architecture-independent files, as defined by the Filesystem
267## Hierarchy Standard (FHS).
268## The nodist_ prefix instructs Automake to not generate rules for including
269## the listed files in the distribution on 'make dist'. Files that are listed
270## in _HEADERS variables are normally included in the distribution, but the
271## configuration header file is generated at configure time and should not be
272## shipped with the source tarball.
[e5bf2b]273libMolecuilder_la_libincludedir = $(libdir)/MoleCuilder/include
274nodist_libMolecuilder_la_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
[255971]275
276## Install the generated pkg-config file (.pc) into the expected location for
277## architecture-dependent package configuration information. Occasionally,
278## pkg-config files are also used for architecture-independent data packages,
279## in which case the correct install location would be $(datadir)/pkgconfig.
280pkgconfigdir = $(libdir)/pkgconfig
[acbe1b]281pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
[255971]282
[ef9df36]283
[a10cc0]284INCLUDES = \
285 -I$(top_srcdir)/src/unittests \
286 -I$(top_srcdir)/src/Actions \
287 -I$(top_srcdir)/src/UIElements \
[004d5c]288 -I$(top_srcdir)/LinearAlgebra/src
[ef9df36]289
[004d5c]290bin_PROGRAMS += molecuilder joiner analyzer
[796aa6]291EXTRA_PROGRAMS = unity
[04488a]292
[b1d8092]293
[936a02]294extrastuffdir = $(datadir)/@PACKAGE@/data
295databasedir = $(extrastuffdir)/databases
296database_DATA = \
297 ${top_srcdir}/data/databases/*.db
298
299bondtabledir = $(extrastuffdir)/bondtables
300bondtable_DATA = \
301 ${top_srcdir}/data/bondtables/*.dat
[b1d8092]302
[936a02]303moleculedir = $(extrastuffdir)/molecules
304molecule_DATA = \
305 ${top_srcdir}/data/molecules/*.pdb
[b1d8092]306
[c015b3]307if CONDPYTHON
[693a80]308pyexec_LTLIBRARIES += pyMoleCuilder.la
[949953]309pyMoleCuilder_la_SOURCES = \
310 cleanUp.cpp \
311 cleanUp.hpp \
[48d3c0]312 Actions/Action_impl_python.hpp \
313 Actions/GlobalListOfActions.hpp \
[cc6e5c]314 Actions/ActionHistory.hpp
[693a80]315pyMoleCuilder_la_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS} -I$(PYTHON_INCLUDE_DIR)
[785218]316pyMoleCuilder_la_LDFLAGS = -module -avoid-version -shared $(BOOST_PYTHON_LDFLAGS)
[693a80]317pyMoleCuilder_la_LIBADD = \
[eb0d77]318 libMolecuilderUI.la
319pyMoleCuilder_la_LIBADD += \
[785218]320 $(BOOST_PYTHON_LIBS) \
[693a80]321 ${CodePatterns_LIBS} \
322 -l$(PYTHON_LIB)
[c015b3]323endif
[693a80]324
[715085]325
[7e3f11a]326
[14de8e1]327molecuilder_CPPFLAGS = $(AM_CPPFLAGS)
328#molecuilder_CPPFLAGS += -DNO_CACHING
329molecuilder_LDFLAGS = \
330 $(AM_LDFLAGS) \
331 $(BOOST_FILESYSTEM_LDFLAGS) \
332 $(BOOST_PROGRAM_OPTIONS_LDFLAGS) \
333 $(BOOST_RANDOM_LDFLAGS) \
334 $(BOOST_SYSTEM_LDFLAGS) \
335 $(BOOST_THREAD_LDFLAGS)
[949953]336molecuilder_SOURCES = \
337 builder.cpp \
338 builder_init.cpp \
[7e3f11a]339 builder_init.hpp
[952f38]340molecuilder_LDADD = \
[eb0d77]341 libMolecuilderUI.la
342molecuilder_LDADD += \
[bf4b9f]343 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
[a0064e]344 ${CodePatterns_LIBS} \
[79de12]345 $(BOOST_THREAD_LIBS) \
346 $(BOOST_PROGRAM_OPTIONS_LIBS) \
347 $(BOOST_RANDOM_LIBS) \
[37ce5d]348 $(BOOST_FILESYSTEM_LIBS) \
349 $(BOOST_SYSTEM_LIBS)
[14de8e1]350
351if CONDPYTHON
352molecuilder_SOURCES += \
353 Actions/Action_impl_python.hpp \
354 Actions/GlobalListOfActions.hpp
355molecuilder_CPPFLAGS += -I$(PYTHON_INCLUDE_DIR)
356molecuilder_LDFLAGS += $(BOOST_PYTHON_LDFLAGS)
357molecuilder_LDADD += \
358 $(BOOST_PYTHON_LIBS) \
359 ${CodePatterns_LIBS} \
360 -l$(PYTHON_LIB)
361endif
[b1d8092]362
[4cf323d]363#Stuff for building the GUI using Qt
[c015b3]364if CONDQTGUI
365bin_PROGRAMS += molecuildergui
[949953]366molecuildergui_SOURCES = \
367 builder.cpp \
368 builder_init.cpp \
369 builder_init.hpp \
[7e3f11a]370 Python/PythonScripting.hpp
[14de8e1]371molecuildergui_CPPFLAGS = $(AM_CPPFLAGS) -DUSE_GUI_QT
372molecuildergui_LDFLAGS = \
373 $(AM_LDFLAGS) \
374 $(BOOST_FILESYSTEM_LDFLAGS) \
375 $(BOOST_PROGRAM_OPTIONS_LDFLAGS) \
376 $(BOOST_SYSTEM_LDFLAGS) \
377 $(BOOST_THREAD_LDFLAGS)
[952f38]378molecuildergui_LDADD = \
[455573]379 libMolecuilderQtUI.la \
[eb0d77]380 libMolecuilderUI.la
381molecuildergui_LDADD += \
[bf4b9f]382 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
[a0064e]383 ${CodePatterns_LIBS} \
[79de12]384 $(BOOST_THREAD_LIBS) \
385 $(BOOST_PROGRAM_OPTIONS_LIBS) \
386 $(BOOST_RANDOM_LIBS) \
387 $(BOOST_FILESYSTEM_LIBS) \
[37ce5d]388 $(BOOST_SYSTEM_LIBS) \
[455573]389 $(GUI_LIBS)
[14de8e1]390
391if CONDPYTHON
392molecuildergui_SOURCES += \
393 Actions/Action_impl_python.hpp \
394 Actions/GlobalListOfActions.hpp
395molecuildergui_CPPFLAGS += -I$(PYTHON_INCLUDE_DIR)
396molecuildergui_LDFLAGS += $(BOOST_PYTHON_LDFLAGS)
397molecuildergui_LDADD += \
398 $(BOOST_PYTHON_LIBS) \
399 ${CodePatterns_LIBS} \
400 -l$(PYTHON_LIB)
401endif
402
[c015b3]403endif
[b1d8092]404
[3bdb6d]405joiner_SOURCES = Fragmentation/joiner.cpp Fragmentation/datacreator.cpp Fragmentation/datacreator.hpp
[14de8e1]406joiner_CPPFLAGS = $(AM_CPPFLAGS)
[3b5fca]407joiner_LDFLAGS = $(AM_LDFLAGS) $(BOOST_THREAD_LDFLAGS)
[255971]408joiner_LDADD = \
[a9b86d]409 libMolecuilderFragmentation.la \
[fbf143]410 libMolecuilderFragmentation_KeysetsContainer.la \
[2fadb6f]411 libMolecuilderHelpers.la \
[3bdb6d]412 libMolecuilderElement.la \
[bf4b9f]413 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
[a0064e]414 ${CodePatterns_LIBS} \
[79de12]415 $(BOOST_THREAD_LIBS)
[b1d8092]416
[3bdb6d]417analyzer_SOURCES = Fragmentation/analyzer.cpp Fragmentation/datacreator.cpp Fragmentation/datacreator.hpp
[14de8e1]418analyzer_CPPFLAGS = $(AM_CPPFLAGS)
[3b5fca]419analyzer_LDFLAGS = $(AM_LDFLAGS) $(BOOST_THREAD_LDFLAGS)
[255971]420analyzer_LDADD = \
[a9b86d]421 libMolecuilderFragmentation.la \
[fbf143]422 libMolecuilderFragmentation_KeysetsContainer.la \
[2fadb6f]423 libMolecuilderHelpers.la \
[3bdb6d]424 libMolecuilderElement.la \
[bf4b9f]425 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
[a0064e]426 ${CodePatterns_LIBS} \
[79de12]427 $(BOOST_THREAD_LIBS)
[14de469]428
[004d5c]429if CONDJOBMARKET
[cc5db5]430CONTROLLERSOURCE = \
[fd4d5e]431 controller_MPQCCommandJob.cpp \
[7da5cd]432 ControllerOptions_MPQCCommandJob.cpp
[cc5db5]433
434CONTROLLERHEADER = \
[fd4d5e]435 controller_MPQCCommandJob.hpp \
[7da5cd]436 ControllerOptions_MPQCCommandJob.hpp
437
[fd4d5e]438
439noinst_LTLIBRARIES += libFragmentationAutomationController.la
440libFragmentationAutomationController_la_includedir = $(includedir)/MoleCuilder/JobMarket
441nobase_libFragmentationAutomationController_la_include_HEADERS = $(CONTROLLERHEADER)
442libFragmentationAutomationController_la_SOURCES = $(CONTROLLERSOURCE)
[004d5c]443 libFragmentationAutomationController_la_CPPFLAGS = $(AM_CPPFLAGS) $(JobMarket_CFLAGS)
[fd4d5e]444libFragmentationAutomationController_la_LIBADD = \
[004d5c]445 ${JobMarket_Controller_LIBS} \
446 $(JobMarket_LIBS)
[cc5db5]447
[fd4d5e]448bin_PROGRAMS += Controller PoolWorker Server
449
[7da5cd]450Controller_SOURCES = controller.cpp controller_AddOn_MPQCCommandJob.cpp
[4d4ef8]451Controller_LDFLAGS = $(AM_LDFLAGS) $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) ${CodePatterns_LDFLAGS}
[14de8e1]452Controller_CPPFLAGS = $(AM_CPPFLAGS) $(JobMarket_CFLAGS)
[cc5db5]453Controller_LDADD = \
[7da5cd]454 libFragmentationAutomationController.la \
[fe0355]455 libMolecuilderFragmentation_getFromKeysetStub.la \
[a10cc0]456 libMolecuilderFragmentation.la \
[049d4a]457 libMolecuilderJobs.la \
458 libMolecuilderFragmentationSummation.la \
[353326]459 libMolecuilderFragmentation_KeysetsContainer.la \
[a10cc0]460 libMolecuilderHelpers.la \
[004d5c]461 $(JobMarket_Controller_LIBS) \
462 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
[4d4ef8]463 $(BOOST_SERIALIZATION_LIBS) \
[7da5cd]464 $(BOOST_PROGRAM_OPTIONS_LIBS) \
465 ${CodePatterns_LIBS}
[fd4d5e]466
[7da5cd]467PoolWorker_SOURCES = poolworker.cpp
[4d4ef8]468PoolWorker_LDFLAGS = $(AM_LDFLAGS) $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) ${CodePatterns_LDFLAGS}
[14de8e1]469PoolWorker_CPPFLAGS = $(AM_CPPFLAGS) $(JobMarket_CFLAGS)
[cc5db5]470PoolWorker_LDADD = \
[004d5c]471 libMolecuilderJobs.la \
[fbf143]472 libMolecuilderFragmentationSummation.la \
[004d5c]473 ${JobMarket_PoolWorker_LIBS} \
474 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
[4d4ef8]475 $(BOOST_SERIALIZATION_LIBS) \
476 $(BOOST_PROGRAM_OPTIONS_LIBS) \
[7da5cd]477 ${CodePatterns_LIBS}
[fd4d5e]478
[7da5cd]479Server_SOURCES = Server.cpp
[4d4ef8]480Server_LDFLAGS = $(AM_LDFLAGS) $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) ${CodePatterns_LDFLAGS}
[14de8e1]481Server_CPPFLAGS = $(AM_CPPFLAGS) $(JobMarket_CFLAGS)
[cc5db5]482Server_LDADD = \
[004d5c]483 libMolecuilderJobs.la \
[fbf143]484 libMolecuilderFragmentationSummation.la \
[004d5c]485 ${JobMarket_Server_LIBS} \
486 $(top_builddir)/LinearAlgebra/src/LinearAlgebra/libLinearAlgebra.la \
[4d4ef8]487 $(BOOST_SERIALIZATION_LIBS) \
488 $(BOOST_PROGRAM_OPTIONS_LIBS) \
[7da5cd]489 ${CodePatterns_LIBS}
[004d5c]490endif
[cc5db5]491
[455573]492unity_SOURCES = unity.cpp
[14de8e1]493unity_CPPFLAGS = $(AM_CPPFLAGS)
[3b5fca]494unity_LDFLAGS = $(AM_LDFLAGS) $(BOOST_FILESYSTEM_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LDFLAGS) $(BOOST_RANDOM_LDFLAGS) $(BOOST_SYSTEM_LDFLAGS) $(BOOST_THREAD_LDFLAGS)
[79de12]495unity_LDADD = \
496 ${CodePatterns_LIBS} \
497 $(BOOST_THREAD_LIBS) \
498 $(BOOST_PROGRAM_OPTIONS_LIBS) \
499 $(BOOST_RANDOM_LIBS) \
[37ce5d]500 $(BOOST_FILESYSTEM_LIBS) \
501 $(BOOST_SYSTEM_LIBS)
[455573]502
[65b6e0]503
[a8eb4a]504FORCE:
505$(srcdir)/.git-version: FORCE
[f8be39]506 @if (test -d $(top_srcdir)/.git && cd $(srcdir) \
507 && { git describe --dirty --always || git describe; } ) > .git-version-t 2>/dev/null \
[a8eb4a]508 && ! diff .git-version-t $(srcdir)/.git-version >/dev/null 2>&1; then \
509 mv -f .git-version-t $(srcdir)/.git-version; \
510 else \
511 rm -f .git-version-t; \
512 fi
513
[fd4d5e]514EXTRA_DIST += \
[936a02]515 $(srcdir)/.git-version \
516 $(bondtable_DATA) \
517 $(database_DATA) \
518 $(molecule_DATA)
[a8eb4a]519
520$(srcdir)/version.c: $(srcdir)/.git-version
[5f8660a]521 echo "const char *MOLECUILDERVERSION = \"$(PACKAGE_NAME) version "`cat $(srcdir)/.git-version`"\";" > $@
[a8eb4a]522
[b8d1aeb]523
[d223d5]524unity.cpp: ${MOLECUILDERSOURCE} ${MOLECUILDERHEADER}
525 list='$(MOLECUILDERSOURCE)'; for file in $$list; do \
[b0b086]526 echo "#include \"$(srcdir)/$$file\"" >> unity.cpp; \
[d223d5]527 done; \
528 subdirs='$(SUBDIRS)';for directory in $$subdirs; do\
529 olddir=$$PWD;\
530 cd $$directory && make unity.cpp;\
531 cd $$olddir;\
532 echo "#include \"$$directory/unity.cpp\"" >> unity.cpp;\
533 done;\
534 echo "#include \"$(srcdir)/builder.cpp\"" >> unity.cpp;
535 echo "#include \"$(srcdir)/version.c\"" >> unity.cpp;
536
[455573]537MOSTLYCLEANFILES += unity.cpp
[1ee3b8d]538
Note: See TracBrowser for help on using the repository browser.