1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2012 University of Bonn. All rights reserved.
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5 | *
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6 | *
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7 | * This file is part of MoleCuilder.
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8 | *
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9 | * MoleCuilder is free software: you can redistribute it and/or modify
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10 | * it under the terms of the GNU General Public License as published by
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11 | * the Free Software Foundation, either version 2 of the License, or
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12 | * (at your option) any later version.
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13 | *
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14 | * MoleCuilder is distributed in the hope that it will be useful,
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15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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17 | * GNU General Public License for more details.
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18 | *
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19 | * You should have received a copy of the GNU General Public License
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20 | * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
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21 | */
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22 |
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23 | /*
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24 | * LinkedCell_ControllerUnitTest.cpp
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25 | *
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26 | * Created on: Nov 29, 2011
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27 | * Author: heber
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28 | */
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29 |
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30 | // include config.h
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31 | #ifdef HAVE_CONFIG_H
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32 | #include <config.h>
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33 | #endif
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34 |
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35 | using namespace std;
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36 |
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37 | #include <cppunit/CompilerOutputter.h>
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38 | #include <cppunit/extensions/TestFactoryRegistry.h>
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39 | #include <cppunit/ui/text/TestRunner.h>
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40 |
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41 | #include "Atom/atom.hpp"
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42 | #include "Box.hpp"
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43 | #include "CodePatterns/Assert.hpp"
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44 | #include "LinearAlgebra/RealSpaceMatrix.hpp"
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45 | #include "LinkedCell/LinkedCell_Controller.hpp"
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46 | #include "LinkedCell/LinkedCell_View.hpp"
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47 | #include "LinkedCell/LinkedCell_View_ModelWrapper.hpp"
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48 | #include "LinkedCell/unittests/defs.hpp"
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49 | #include "LinkedCell/PointCloudAdaptor.hpp"
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50 |
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51 | #include "LinkedCell_ControllerUnitTest.hpp"
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52 |
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53 | #ifdef HAVE_TESTRUNNER
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54 | #include "UnitTestMain.hpp"
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55 | #endif /*HAVE_TESTRUNNER*/
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56 |
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57 | /********************************************** Test classes **************************************/
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58 |
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59 | // Registers the fixture into the 'registry'
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60 | CPPUNIT_TEST_SUITE_REGISTRATION( LinkedCell_ControllerTest );
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61 |
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62 |
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63 | void LinkedCell_ControllerTest::setUp()
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64 | {
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65 | // failing asserts should be thrown
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66 | ASSERT_DO(Assert::Throw);
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67 |
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68 | // create diag(20.) matrix
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69 | BoxM = new RealSpaceMatrix;
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70 | BoxM->setIdentity();
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71 | (*BoxM) *= DOMAINLENGTH;
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72 |
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73 | // create Box with this matrix
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74 | domain = new Box(*BoxM);
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75 |
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76 | controller = new LinkedCell::LinkedCell_Controller(*domain);
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77 |
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78 | // create empty set
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79 | emptyset = new PointCloudAdaptor< std::vector<atom *> >(&emptyvector, std::string("emptyset"));
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80 | }
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81 |
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82 |
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83 | void LinkedCell_ControllerTest::tearDown()
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84 | {
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85 | delete controller;
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86 | delete domain;
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87 | delete emptyset;
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88 | }
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89 |
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90 | /** UnitTest for LinkedCell_Controller's lower and upper thresholds.
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91 | */
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92 | void LinkedCell_ControllerTest::thresholdTest()
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93 | {
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94 | /// re-create instances
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95 | delete controller;
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96 | delete domain;
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97 |
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98 | /// create diag(..) matrix beyond upper_threshold
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99 | const double old_threshold = controller->upper_threshold;
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100 | controller->lower_threshold = old_threshold*0.9;
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101 | RealSpaceMatrix BoxM;
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102 | BoxM.setIdentity();
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103 | BoxM *= controller->upper_threshold*.5;
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104 |
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105 | /// create Box with this matrix
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106 | domain = new Box(BoxM);
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107 |
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108 | controller = new LinkedCell::LinkedCell_Controller(*domain);
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109 |
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110 | /// check that thresholds have been adapted
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111 | CPPUNIT_ASSERT( controller->upper_threshold != old_threshold );
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112 | CPPUNIT_ASSERT( controller->lower_threshold != old_threshold*0.9 );
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113 | }
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114 |
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115 | /** UnitTest for LinkedCell_Controller::getHeuristicRange().
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116 | */
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117 | void LinkedCell_ControllerTest::getHeuristicRangeTest()
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118 | {
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119 | /// re-implementing function to check is nonsense here, instead try some
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120 | /// hard-coded, working values;
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121 | controller->lower_threshold = 1.;
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122 | controller->upper_threshold = 20.;
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123 | const double inbetween = 9.5; // half and twice is definitely within both thresholds.
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124 |
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125 | /// check distance in between
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126 | range<double> interval = controller->getHeuristicRange(inbetween);
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127 | CPPUNIT_ASSERT ( interval.first != controller->lower_threshold );
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128 | CPPUNIT_ASSERT ( interval.last != controller->upper_threshold );
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129 | }
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130 |
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131 | /** UnitTest for LinkedCell_Controller::getViewTest() for getting twice the same view.
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132 | */
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133 | void LinkedCell_ControllerTest::getView_SameViewTest()
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134 | {
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135 | /// obtain a view
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136 | CPPUNIT_ASSERT_EQUAL( (size_t)0, controller->ModelsMap.size() );
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137 | LinkedCell::LinkedCell_View view = controller->getView(2., *emptyset);
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138 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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139 |
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140 | {
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141 | /// get same view again and check that now new instance appears
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142 | LinkedCell::LinkedCell_View view_again = controller->getView(2., *emptyset);
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143 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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144 | }
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145 | }
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146 |
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147 | /** UnitTest for LinkedCell_Controller::getViewTest() for picking two different views.
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148 | */
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149 | void LinkedCell_ControllerTest::getView_DifferentViewTest()
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150 | {
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151 | /// obtain a view
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152 | CPPUNIT_ASSERT_EQUAL( (size_t)0, controller->ModelsMap.size() );
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153 | LinkedCell::LinkedCell_View view = controller->getView(2., *emptyset);
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154 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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155 |
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156 | {
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157 | /// pick another view that is not close enough
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158 | LinkedCell::LinkedCell_View view_other = controller->getView(5., *emptyset);
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159 | CPPUNIT_ASSERT_EQUAL( (size_t)2, controller->ModelsMap.size() );
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160 | }
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161 | }
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162 |
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163 | /** UnitTest for LinkedCell_Controller::getViewTest() for picking further views in range of present one.
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164 | */
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165 | void LinkedCell_ControllerTest::getView_InRangeViewTest()
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166 | {
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167 | /// obtain a view
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168 | const double edgelength = 2.;
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169 | CPPUNIT_ASSERT_EQUAL( (size_t)0, controller->ModelsMap.size() );
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170 | LinkedCell::LinkedCell_View view = controller->getView(edgelength, *emptyset);
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171 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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172 |
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173 | /// pick views that are close enough
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174 | range<double> interval = controller->getHeuristicRange(edgelength);
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175 | {
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176 | /// ... at half lower interval half
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177 | LinkedCell::LinkedCell_View view_lowerhalf = controller->getView((edgelength + interval.first)/2., *emptyset);
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178 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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179 | }
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180 | {
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181 | /// ... at half upper interval half
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182 | LinkedCell::LinkedCell_View view_upperhalf = controller->getView((interval.last + edgelength)/2., *emptyset);
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183 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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184 | }
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185 | {
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186 | /// ... close to lower boundary
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187 | LinkedCell::LinkedCell_View view_closelower = controller->getView(interval.first + std::numeric_limits<double>::round_error(), *emptyset);
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188 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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189 | }
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190 | {
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191 | /// ... close to upper boundary
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192 | LinkedCell::LinkedCell_View view_closerupper = controller->getView(interval.last - std::numeric_limits<double>::round_error(), *emptyset);
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193 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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194 | }
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195 | {
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196 | /// on lower boundary
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197 | LinkedCell::LinkedCell_View view_onlower = controller->getView(interval.first, *emptyset);
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198 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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199 | }
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200 | }
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201 |
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202 | /** UnitTest for LinkedCell_Controller::getViewTest() for picking further views outside range.
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203 | */
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204 | void LinkedCell_ControllerTest::getView_OutOfRangeViewTest()
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205 | {
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206 | /// Here we need half of the edge length to be greater than lower_threshold
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207 | const double edgelength = 2.5;
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208 | CPPUNIT_ASSERT( (edgelength/2.) > controller->lower_threshold );
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209 | /// obtain a view
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210 | CPPUNIT_ASSERT_EQUAL( (size_t)0, controller->ModelsMap.size() );
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211 | LinkedCell::LinkedCell_View view = controller->getView(edgelength, *emptyset);
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212 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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213 |
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214 | /// pick views that are not close enough and check for new instance
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215 | range<double> interval = controller->getHeuristicRange(edgelength);
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216 | {
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217 | /// ... outside lower boundary
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218 | LinkedCell::LinkedCell_View view_outsidelower = controller->getView(interval.first - std::numeric_limits<double>::round_error(), *emptyset);
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219 | CPPUNIT_ASSERT_EQUAL( (size_t)2, controller->ModelsMap.size() );
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220 | }
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221 | {
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222 | /// ... on upper boundary
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223 | LinkedCell::LinkedCell_View view_onupper = controller->getView(interval.last, *emptyset);
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224 | CPPUNIT_ASSERT_EQUAL( (size_t)3, controller->ModelsMap.size() );
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225 | }
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226 | }
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227 |
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228 | /** UnitTest for LinkedCell_Controller::getViewTest() for picking views beneath lower threshold.
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229 | */
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230 | void LinkedCell_ControllerTest::getView_LowerThresholdViewTest()
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231 | {
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232 | /// obtain a view
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233 | const double edgelength = 1.9*controller->lower_threshold;
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234 | CPPUNIT_ASSERT_EQUAL( (size_t)0, controller->ModelsMap.size() );
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235 | LinkedCell::LinkedCell_View view = controller->getView(edgelength, *emptyset);
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236 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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237 |
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238 | {
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239 | /// get a view at threshold and check that no new instance has been created
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240 | LinkedCell::LinkedCell_View view_onlower = controller->getView(controller->lower_threshold, *emptyset);
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241 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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242 | }
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243 | {
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244 | /// pick a view below 1.
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245 | LinkedCell::LinkedCell_View view_beneathlower = controller->getView(0.1*controller->lower_threshold, *emptyset);
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246 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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247 | }
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248 | }
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249 |
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250 | /** UnitTest for LinkedCell_Controller::getViewTest() for picking views above upper threshold.
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251 | */
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252 | void LinkedCell_ControllerTest::getView_UpperThresholdViewTest()
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253 | {
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254 | /// obtain a view
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255 | const double edgelength = controller->upper_threshold;
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256 | CPPUNIT_ASSERT_EQUAL( (size_t)0, controller->ModelsMap.size() );
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257 | LinkedCell::LinkedCell_View view = controller->getView(edgelength, *emptyset);
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258 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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259 |
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260 | {
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261 | /// get a view beyond threshold and check that no new instance has been created
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262 | LinkedCell::LinkedCell_View view_beyondupper = controller->getView(1.1*controller->upper_threshold, *emptyset);
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263 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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264 | }
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265 |
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266 | {
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267 | /// pick a view below threshold and check for new instance (if we make it outside acceptable range)
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268 | range<double> interval = controller->getHeuristicRange(edgelength);
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269 | if ( !interval.isInRange(0.1*controller->upper_threshold) ) {
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270 | LinkedCell::LinkedCell_View view_beneathupper = controller->getView(0.1*controller->upper_threshold, *emptyset);
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271 | CPPUNIT_ASSERT_EQUAL( (size_t)2, controller->ModelsMap.size() );
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272 | }
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273 | }
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274 | }
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275 |
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276 | /** UnitTest for LinkedCell_Controller::updateModels().
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277 | */
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278 | void LinkedCell_ControllerTest::updateBoxTest()
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279 | {
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280 | /// obtain a view
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281 | const double edgelength = controller->upper_threshold;
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282 | CPPUNIT_ASSERT_EQUAL( (size_t)0, controller->ModelsMap.size() );
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283 | LinkedCell::LinkedCell_View view = controller->getView(edgelength, *emptyset);
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284 | CPPUNIT_ASSERT_EQUAL( (size_t)1, controller->ModelsMap.size() );
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285 | const LinkedCell::LinkedCell_Model * const model = view.LC->getModel();
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286 |
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287 | /// change box matrix
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288 | domain->setM(*BoxM);
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289 |
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290 | /// check that model has changed
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291 | CPPUNIT_ASSERT( model != view.LC->getModel() );
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292 | }
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