| 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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| 4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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| 8 | /*
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| 9 | * Line.cpp
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| 10 | *
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| 11 | * Created on: Apr 30, 2010
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| 12 | * Author: crueger
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| 13 | */
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| 14 |
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| 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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| 20 | #include "CodePatterns/MemDebug.hpp"
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| 21 |
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| 22 | #include "LinearAlgebra/Line.hpp"
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| 23 |
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| 24 | #include <cmath>
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| 25 | #include <iostream>
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| 26 | #include <limits>
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| 27 |
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| 28 | #include "CodePatterns/Info.hpp"
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| 29 | #include "CodePatterns/Log.hpp"
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| 30 | #include "CodePatterns/Verbose.hpp"
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| 31 | #include "Exceptions/LinearDependenceException.hpp"
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| 32 | #include "Exceptions/SkewException.hpp"
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| 33 | #include "LinearAlgebra/defs.hpp"
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| 34 | #include "LinearAlgebra/MatrixContent.hpp"
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| 35 | #include "LinearAlgebra/Plane.hpp"
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| 36 | #include "LinearAlgebra/Vector.hpp"
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| 37 |
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| 38 | using namespace std;
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| 39 |
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| 40 | Line::Line(const Vector &_origin, const Vector &_direction) :
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| 41 | direction(new Vector(_direction))
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| 42 | {
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| 43 | direction->Normalize();
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| 44 | origin.reset(new Vector(_origin.partition(*direction).second));
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| 45 | }
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| 46 |
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| 47 | Line::Line(const Line &src) :
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| 48 | origin(new Vector(*src.origin)),
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| 49 | direction(new Vector(*src.direction))
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| 50 | {}
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| 51 |
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| 52 | Line::~Line()
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| 53 | {}
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| 54 |
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| 55 | Line &Line::operator=(const Line& rhs){
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| 56 | if(this!=&rhs){
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| 57 | origin.reset(new Vector(*rhs.origin));
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| 58 | direction.reset(new Vector(*rhs.direction));
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| 59 | }
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| 60 | return *this;
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| 61 | }
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| 62 |
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| 63 |
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| 64 | double Line::distance(const Vector &point) const{
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| 65 | // get any vector from line to point
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| 66 | Vector helper = point - *origin;
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| 67 | // partition this vector along direction
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| 68 | // the residue points from the line to the point
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| 69 | return helper.partition(*direction).second.Norm();
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| 70 | }
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| 71 |
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| 72 | Vector Line::getClosestPoint(const Vector &point) const{
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| 73 | // get any vector from line to point
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| 74 | Vector helper = point - *origin;
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| 75 | // partition this vector along direction
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| 76 | // add only the part along the direction
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| 77 | return *origin + helper.partition(*direction).first;
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| 78 | }
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| 79 |
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| 80 | Vector Line::getDirection() const{
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| 81 | return *direction;
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| 82 | }
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| 83 |
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| 84 | Vector Line::getOrigin() const{
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| 85 | return *origin;
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| 86 | }
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| 87 |
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| 88 | vector<Vector> Line::getPointsOnLine() const{
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| 89 | vector<Vector> res;
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| 90 | res.reserve(2);
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| 91 | res.push_back(*origin);
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| 92 | res.push_back(*origin+*direction);
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| 93 | return res;
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| 94 | }
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| 95 |
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| 96 | /** Calculates the intersection of the two lines that are both on the same plane.
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| 97 | * This is taken from Weisstein, Eric W. "Line-Line Intersection." From MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/Line-LineIntersection.html
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| 98 | * \param *out output stream for debugging
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| 99 | * \param *Line1a first vector of first line
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| 100 | * \param *Line1b second vector of first line
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| 101 | * \param *Line2a first vector of second line
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| 102 | * \param *Line2b second vector of second line
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| 103 | * \return true - \a this will contain the intersection on return, false - lines are parallel
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| 104 | */
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| 105 | Vector Line::getIntersection(const Line& otherLine) const{
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| 106 | Info FunctionInfo(__func__);
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| 107 |
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| 108 | pointset line1Points = getPointsOnLine();
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| 109 |
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| 110 | Vector Line1a = line1Points[0];
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| 111 | Vector Line1b = line1Points[1];
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| 112 |
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| 113 | pointset line2Points = otherLine.getPointsOnLine();
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| 114 |
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| 115 | Vector Line2a = line2Points[0];
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| 116 | Vector Line2b = line2Points[1];
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| 117 |
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| 118 | Vector res;
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| 119 |
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| 120 | auto_ptr<MatrixContent> M = auto_ptr<MatrixContent>(new MatrixContent(4,4));
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| 121 |
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| 122 | M->setValue(1.);
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| 123 | for (int i=0;i<3;i++) {
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| 124 | M->set(0, i, Line1a[i]);
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| 125 | M->set(1, i, Line1b[i]);
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| 126 | M->set(2, i, Line2a[i]);
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| 127 | M->set(3, i, Line2b[i]);
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| 128 | }
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| 129 |
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| 130 | //Log() << Verbose(1) << "Coefficent matrix is:" << endl;
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| 131 | //for (int i=0;i<4;i++) {
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| 132 | // for (int j=0;j<4;j++)
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| 133 | // cout << "\t" << M->Get(i,j);
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| 134 | // cout << endl;
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| 135 | //}
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| 136 | if (fabs(M->Determinant()) > LINALG_MYEPSILON) {
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| 137 | Log() << Verbose(1) << "Determinant of coefficient matrix is NOT zero." << endl;
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| 138 | throw SkewException(__FILE__,__LINE__);
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| 139 | }
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| 140 |
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| 141 | Log() << Verbose(1) << "INFO: Line1a = " << Line1a << ", Line1b = " << Line1b << ", Line2a = " << Line2a << ", Line2b = " << Line2b << "." << endl;
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| 142 |
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| 143 |
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| 144 | // constuct a,b,c
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| 145 | Vector a = Line1b - Line1a;
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| 146 | Vector b = Line2b - Line2a;
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| 147 | Vector c = Line2a - Line1a;
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| 148 | Vector d = Line2b - Line1b;
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| 149 | Log() << Verbose(1) << "INFO: a = " << a << ", b = " << b << ", c = " << c << "." << endl;
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| 150 | if ((a.NormSquared() <= LINALG_MYEPSILON) || (b.NormSquared() <= LINALG_MYEPSILON)) {
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| 151 | res.Zero();
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| 152 | Log() << Verbose(1) << "At least one of the lines is ill-defined, i.e. offset equals second vector." << endl;
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| 153 | throw LinearDependenceException(__FILE__,__LINE__);
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| 154 | }
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| 155 |
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| 156 | // check for parallelity
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| 157 | Vector parallel;
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| 158 | double factor = 0.;
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| 159 | if (fabs(a.ScalarProduct(b)*a.ScalarProduct(b)/a.NormSquared()/b.NormSquared() - 1.) <= LINALG_MYEPSILON) {
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| 160 | parallel = Line1a - Line2a;
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| 161 | factor = parallel.ScalarProduct(a)/a.Norm();
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| 162 | if ((factor > -LINALG_MYEPSILON) && (factor - 1. <= LINALG_MYEPSILON)) {
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| 163 | res = Line2a;
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| 164 | Log() << Verbose(1) << "Lines conincide." << endl;
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| 165 | return res;
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| 166 | } else {
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| 167 | parallel = Line1a - Line2b;
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| 168 | factor = parallel.ScalarProduct(a)/a.Norm();
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| 169 | if ((factor > -LINALG_MYEPSILON) && (factor - 1. <= LINALG_MYEPSILON)) {
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| 170 | res = Line2b;
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| 171 | Log() << Verbose(1) << "Lines conincide." << endl;
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| 172 | return res;
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| 173 | }
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| 174 | }
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| 175 | Log() << Verbose(1) << "Lines are parallel." << endl;
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| 176 | res.Zero();
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| 177 | throw LinearDependenceException(__FILE__,__LINE__);
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| 178 | }
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| 179 |
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| 180 | // obtain s
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| 181 | double s;
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| 182 | Vector temp1, temp2;
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| 183 | temp1 = c;
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| 184 | temp1.VectorProduct(b);
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| 185 | temp2 = a;
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| 186 | temp2.VectorProduct(b);
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| 187 | Log() << Verbose(1) << "INFO: temp1 = " << temp1 << ", temp2 = " << temp2 << "." << endl;
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| 188 | if (fabs(temp2.NormSquared()) > LINALG_MYEPSILON)
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| 189 | s = temp1.ScalarProduct(temp2)/temp2.NormSquared();
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| 190 | else
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| 191 | s = 0.;
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| 192 | Log() << Verbose(1) << "Factor s is " << temp1.ScalarProduct(temp2) << "/" << temp2.NormSquared() << " = " << s << "." << endl;
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| 193 |
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| 194 | // construct intersection
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| 195 | res = a;
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| 196 | res.Scale(s);
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| 197 | res += Line1a;
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| 198 | Log() << Verbose(1) << "Intersection is at " << res << "." << endl;
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| 199 |
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| 200 | return res;
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| 201 | }
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| 202 |
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| 203 | /** Rotates the vector by an angle of \a alpha around this line.
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| 204 | * \param rhs Vector to rotate
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| 205 | * \param alpha rotation angle in radian
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| 206 | */
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| 207 | Vector Line::rotateVector(const Vector &rhs, double alpha) const{
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| 208 | Vector helper = rhs;
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| 209 |
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| 210 | // translate the coordinate system so that the line goes through (0,0,0)
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| 211 | helper -= *origin;
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| 212 |
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| 213 | // partition the vector into a part that gets rotated and a part that lies along the line
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| 214 | pair<Vector,Vector> parts = helper.partition(*direction);
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| 215 |
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| 216 | // we just keep anything that is along the axis
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| 217 | Vector res = parts.first;
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| 218 |
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| 219 | // the rest has to be rotated
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| 220 | Vector a = parts.second;
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| 221 | // we only have to do the rest, if we actually could partition the vector
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| 222 | if(!a.IsZero()){
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| 223 | // construct a vector that is orthogonal to a and direction and has length |a|
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| 224 | Vector y = a;
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| 225 | // direction is normalized, so the result has length |a|
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| 226 | y.VectorProduct(*direction);
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| 227 |
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| 228 | res += cos(alpha) * a + sin(alpha) * y;
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| 229 | }
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| 230 |
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| 231 | // translate the coordinate system back
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| 232 | res += *origin;
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| 233 | return res;
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| 234 | }
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| 235 |
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| 236 | Line Line::rotateLine(const Line &rhs, double alpha) const{
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| 237 | Vector lineOrigin = rotateVector(rhs.getOrigin(),alpha);
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| 238 | Vector helper = rhs.getDirection();
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| 239 | // rotate the direction without considering the ofset
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| 240 | pair<Vector,Vector> parts = helper.partition(*direction);
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| 241 | Vector lineDirection = parts.first;
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| 242 | Vector a = parts.second;
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| 243 | if(!a.IsZero()){
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| 244 | // construct a vector that is orthogonal to a and direction and has length |a|
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| 245 | Vector y = a;
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| 246 | // direction is normalized, so the result has length |a|
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| 247 | y.VectorProduct(*direction);
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| 248 |
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| 249 | lineDirection += cos(alpha) * a + sin(alpha) * y;
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| 250 | }
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| 251 | return Line(lineOrigin,lineDirection);
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| 252 | }
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| 253 |
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| 254 | Plane Line::rotatePlane(const Plane &rhs, double alpha) const{
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| 255 | vector<Vector> points = rhs.getPointsOnPlane();
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| 256 | transform(points.begin(),
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| 257 | points.end(),
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| 258 | points.begin(),
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| 259 | boost::bind(&Line::rotateVector,this,_1,alpha));
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| 260 | return Plane(points[0],points[1],points[2]);
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| 261 | }
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| 262 |
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| 263 | Plane Line::getOrthogonalPlane(const Vector &origin) const{
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| 264 | return Plane(getDirection(),origin);
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| 265 | }
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| 266 |
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| 267 | std::vector<Vector> Line::getSphereIntersections() const{
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| 268 | std::vector<Vector> res;
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| 269 |
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| 270 | // line is kept in normalized form, so we can skip a lot of calculations
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| 271 | double discriminant = 1-origin->NormSquared();
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| 272 | // we might have 2, 1 or 0 solutions, depending on discriminant
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| 273 | if(discriminant>=0){
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| 274 | if(discriminant==0){
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| 275 | res.push_back(*origin);
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| 276 | }
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| 277 | else{
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| 278 | Vector helper = sqrt(discriminant)*(*direction);
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| 279 | res.push_back(*origin+helper);
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| 280 | res.push_back(*origin-helper);
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| 281 | }
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| 282 | }
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| 283 | return res;
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| 284 | }
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| 285 |
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| 286 | LinePoint Line::getLinePoint(const Vector &point) const{
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| 287 | ASSERT(isContained(point),"Line point queried for point not on line");
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| 288 | Vector helper = point - (*origin);
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| 289 | double param = helper.ScalarProduct(*direction);
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| 290 | return LinePoint(*this,param);
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| 291 | }
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| 292 |
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| 293 | LinePoint Line::posEndpoint() const{
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| 294 | return LinePoint(*this, numeric_limits<double>::infinity());
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| 295 | }
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| 296 | LinePoint Line::negEndpoint() const{
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| 297 | return LinePoint(*this,-numeric_limits<double>::infinity());
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| 298 | }
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| 299 |
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| 300 | bool operator==(const Line &x,const Line &y){
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| 301 | return *x.origin == *y.origin && *x.direction == *y.direction;
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| 302 | }
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| 303 |
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| 304 | Line makeLineThrough(const Vector &x1, const Vector &x2){
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| 305 | if(x1==x2){
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| 306 | throw LinearDependenceException(__FILE__,__LINE__);
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| 307 | }
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| 308 | return Line(x1,x1-x2);
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| 309 | }
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| 310 |
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| 311 | /******************************** Points on the line ********************/
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| 312 |
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| 313 | LinePoint::LinePoint(const LinePoint &src) :
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| 314 | line(src.line),param(src.param)
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| 315 | {}
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| 316 |
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| 317 | LinePoint::LinePoint(const Line &_line, double _param) :
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| 318 | line(_line),param(_param)
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| 319 | {}
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| 320 |
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| 321 | LinePoint& LinePoint::operator=(const LinePoint &src){
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| 322 | line=src.line;
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| 323 | param=src.param;
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| 324 | return *this;
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| 325 | }
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| 326 |
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| 327 | Vector LinePoint::getPoint() const{
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| 328 | ASSERT(!isInfinite(),"getPoint() on infinite LinePoint called");
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| 329 | return (*line.origin)+param*(*line.direction);
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| 330 | }
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| 331 |
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| 332 | Line LinePoint::getLine() const{
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| 333 | return line;
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| 334 | }
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| 335 |
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| 336 | bool LinePoint::isInfinite() const{
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| 337 | return isPosInfinity() || isNegInfinity();
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| 338 | }
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| 339 | bool LinePoint::isPosInfinity() const{
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| 340 | return param == numeric_limits<double>::infinity();
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| 341 | }
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| 342 | bool LinePoint::isNegInfinity() const{
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| 343 | return param ==-numeric_limits<double>::infinity();
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| 344 | }
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| 345 |
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| 346 | bool operator==(const LinePoint &x, const LinePoint &y){
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| 347 | ASSERT(x.line==y.line,"Operation on two points of different lines");
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| 348 | return x.param == y.param;
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| 349 |
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| 350 | }
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| 351 | bool operator<(const LinePoint &x, const LinePoint &y){
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| 352 | ASSERT(x.line==y.line,"Operation on two points of different lines");
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| 353 | return x.param<y.param;
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| 354 | }
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| 355 |
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| 356 | ostream& operator<<(ostream& ost, const Line& m)
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| 357 | {
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| 358 | const Vector origin = m.getOrigin();
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| 359 | const Vector direction = m.getDirection();
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| 360 | ost << "(";
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| 361 | for (int i=0;i<NDIM;i++) {
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| 362 | ost << origin[i];
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| 363 | if (i != 2)
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| 364 | ost << ",";
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| 365 | }
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| 366 | ost << ") -> (";
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| 367 | for (int i=0;i<NDIM;i++) {
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| 368 | ost << direction[i];
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| 369 | if (i != 2)
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| 370 | ost << ",";
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| 371 | }
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| 372 | ost << ")";
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| 373 | return ost;
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| 374 | };
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| 375 |
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