source: src/Jobs/VMGJob.hpp@ 172b6d

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Last change on this file since 172b6d was e2925fd, checked in by Frederik Heber <heber@…>, 12 years ago

Split long-range calculations into two parts to overcome E-N-potential problems.

The general problem is that smeared-out nuclei charges cannot interact with
electron charge densities as they always overlap, hence we always make a large
error. The idea then is - as the potential energy is symmetric both
densities - to flip from N-E to E-N, i.\,e. to take the electron potential and
evaluate at nuclei positions instead of smeared-out nuclei charges with
eletronic charge distribution. However, then we need to make two calculations
for the four contributions: E-E, E-N and N-N, N-E (=E-N).

  • new enums SampleParticles_t eventually tells InterfaceVMGJob whether to sample the nuclei charges onto the grid or not.
  • TreatGrid_t tells InterfaceVMGJob whether to actually add the electronic charge onto the grid (this was added but is actually not required anymore).
  • FragmentationAutomationAction::performCall() now creates twice as many long-range jobs. This requires two variables in VMGData for storing integrated long-range energy: electron_long, nuclei_long, as both calculations are combined into a single VMGData instance per fragment.
  • Summation of long-range contributions is split into three instead of formerly two parts: electron (E-E), nuclei (N-N), and mixed (E-N). This allows to easierly check their cancellation. This needs new member in fusion map and name in printKeyNames.
  • naturally, the enums have to be passed a long way: VMGFragmentController, VMGJob, VMGData.
  • VMGData now has serialization version 1 due to new entry.
  • we enhanced documentation in FragmentationLongRangeResults::operator()() of how and what is summed per level.
  • FIX: InterfaceVMGJob::ImportRightHandSide() subtracted grid instead of adding it. Now, we set correct sign of electron charge distribution in MPQC.
  • TESTFIX: Regression test AnalyseFragmentResults now has short- and long-range part. Long-range part is only diff'ed when the compiled code has the capabilities.
  • Property mode set to 100644
File size: 4.0 KB
RevLine 
[d2a0f6d]1/*
2 * VMGJob.hpp
3 *
4 * Created on: Jul 12, 2012
5 * Author: heber
6 */
7
8#ifndef VMGJOB_HPP_
9#define VMGJOB_HPP_
10
11
12// include config.h
13#ifdef HAVE_CONFIG_H
14#include <config.h>
15#endif
16
17#include "boost/serialization/export.hpp"
18#include "boost/serialization/vector.hpp"
19
20#include "JobMarket/Jobs/FragmentJob.hpp"
[fbf143]21#include "Fragmentation/Summation/SetValues/SamplingGrid.hpp"
22#include "Fragmentation/Summation/Containers/VMGData.hpp"
[d2a0f6d]23
24#include <vector>
25
26/** This class encapsulates a VMG Job.
27 *
28 * VMGJob calculates the long-range contribution that is missed out so far in the
29 * MPQCJob where the SCF cycle is calculated. To this end
30 *
31 */
32class VMGJob : public FragmentJob
33{
34public:
35 /** Constructor for class VMGJob.
36 *
37 * @param _JobId id of the job
[065574]38 * @param _density_grid sampled electron charge density from short-range solutions
39 * @param _particle_positions position per nuclei
40 * @param _particle_charges charges per nuclei
41 * @param _near_field_cells number of grid-points used to smear our nuclei charge
[cd2591]42 * @param _interpolation_degree degree of interpolation polynomial for getting nuclei
43 * potential from grid
[e2925fd]44 * @param _DoImportParticles whether we import particles (true) or evaluate only
[b6b21a]45 * @param _DoPrintDebug whether we do print grid for debug visualization or not
[d2a0f6d]46 */
[d12d621]47 VMGJob(const JobId_t _JobId,
[cd77fc]48 const SamplingGrid &density_grid,
49 const std::vector< std::vector< double > > &_particle_positions,
[065574]50 const std::vector< double > &_particle_charges,
[cd2591]51 const size_t _near_field_cells,
[b6b21a]52 const size_t _interpolation_degree,
[e2925fd]53 const bool _DoImportParticles=true,
[b6b21a]54 const bool _DoPrintDebug=false
[cd2591]55 );
[d2a0f6d]56 virtual ~VMGJob();
57
58 FragmentResult::ptr Work();
59
[e9cfc4]60private:
61 void InitVMG();
62
[a82602]63 void InitVMGArrays();
64
[d2a0f6d]65private:
[28c025]66 //!> sampled density required as input
67 const SamplingGrid density_grid;
[cd77fc]68 //!> positions of all nuclei
69 const std::vector< std::vector< double > > particle_positions;
70 //!> charges of all nuclei
71 const std::vector< double > particle_charges;
[065574]72 //!> near field cells used in smearing out core charge density
73 const size_t near_field_cells;
[cd2591]74 //!> interpolation degree used in sampling the potential of the nuclei
75 const size_t interpolation_degree;
[e2925fd]76 //!> whether we import particles (true) or evaluate only
77 const bool DoImportParticles;
[b6b21a]78 //!> whether we do print grid for debug visualization or not
79 const bool DoPrintDebug;
[d2a0f6d]80
[2bc560]81private:
82 //!> temporary instance to hold return data
83 VMGData returndata;
84
[e089fb]85 /** This structure stores particle values per particle.
86 *
87 * \note This structure contains temporary information needed during solving
88 * with VMG.
89 * \warning It is specifically not serialized!
90 *
91 */
92 struct particle_arrays {
93 particle_arrays();
94 ~particle_arrays();
95
96 /** Initializes arrays.
97 *
98 * @param _num_particles size of array per dimension
99 */
100 void init(const size_t _num_particles);
101
102 //!> number of particles
103 size_t num_particles;
104 //!> forces array
105 double *f;
106 //!> position array
107 double *x;
108 //!> potential array
109 double *p;
110 //!> charge array
111 double *q;
112 } particles;
[a82602]113
[d2a0f6d]114private:
115 /** private default cstor for serialization only
116 */
117 VMGJob();
118
119 friend class boost::serialization::access;
120 // serialization
121 template <typename Archive>
122 void serialize(Archive& ar, const unsigned int version)
123 {
124 ar & boost::serialization::base_object<FragmentJob>(*this);
[28c025]125 ar & const_cast< SamplingGrid &>(density_grid);
[cd77fc]126 ar & const_cast< std::vector< std::vector< double > > &>(particle_positions);
127 ar & const_cast< std::vector< double > &>(particle_charges);
[065574]128 ar & const_cast< size_t &>(near_field_cells);
[cd2591]129 ar & const_cast< size_t &>(interpolation_degree);
[e2925fd]130 ar & const_cast< bool &>(DoImportParticles);
[b6b21a]131 ar & const_cast< bool &>(DoPrintDebug);
[2bc560]132 ar & returndata;
[d2a0f6d]133 }
134};
135
136// we need to give this class a unique key for serialization
137// its is only serialized through its base class FragmentJob
138BOOST_CLASS_EXPORT_KEY(VMGJob)
139
140#endif /* VMGJOB_HPP_ */
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