source: src/Jobs/MPQCData.hpp@ d12d621

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since d12d621 was d12d621, checked in by Frederik Heber <heber@…>, 12 years ago

VMGJob, MPQCJob, and MPQCData now contain information how to sample the density.

  • begin, size, and level are stored in the classes. Additionally, InterfaceVMG stores the level as VMG::Interface::levelMax is private.
  • We obtain begin and size via the domain size of the system, the level is set via an arbitrary constant that later has to be adapted to the required accuracy.
  • MPQCJob is uses by mpqc to place the infor in resulting MPQCData, wherefrom VMGJobs are constructed that now also contain the vector of sample points.
  • Property mode set to 100644
File size: 2.8 KB
Line 
1/*
2 * MPQCData.hpp
3 *
4 * Created on: Feb 08, 2012
5 * Author: heber
6 */
7
8#ifndef MPQCDATA_HPP_
9#define MPQCDATA_HPP_
10
11// include config.h
12#ifdef HAVE_CONFIG_H
13#include <config.h>
14#endif
15
16#include <boost/serialization/access.hpp>
17#include <boost/serialization/vector.hpp>
18
19#include <iosfwd>
20#include <vector>
21
22class MPQCCommandJob;
23class MPQCCommandJobTest;
24class MPQCDataTest;
25
26/** Internal class that holds the data and can be serialized.
27 *
28 */
29class MPQCData {
30 //!> allow MPQCCommandJob access to member variables directly
31 friend class MPQCCommandJob;
32 //!> grant MPQCCommandJob's unit test access
33 friend class MPQCCommandJobTest;
34 //!> grant unit test access
35 friend class MPQCDataTest;
36 //!> grant access to output stream operator
37 friend std::ostream & operator<<(std::ostream &ost, const MPQCData &data);
38public:
39 bool operator==(const MPQCData &other) const;
40
41 bool operator!=(const MPQCData &other) const {
42 return !(*this == other);
43 }
44
45 /// Energie structure
46 struct energy_t {
47 /** Constructor for struct energy_t, sets all to zero.
48 *
49 */
50 energy_t();
51
52 double total;
53 double nuclear_repulsion;
54 double electron_coulomb;
55 double electron_exchange;
56 double correlation;
57 double overlap;
58 double kinetic;
59 double hcore;
60
61 std::vector<double> eigenvalues;
62 } energies;
63
64 /// Forces
65 typedef std::vector<double> vector_type;
66 std::vector< vector_type > forces;
67
68 /// Density
69 struct density_t {
70 //!> Begin (min coordinates) of grid in real space
71 double begin[3];
72 //!> edge length of cubic(!) domain
73 double size;
74 //!> level of the grid, hence \f$2^\text{level}\f$
75 int level;
76
77 //!> typedef for vector of samples grids
78 typedef std::vector<double> grid_type;
79 //!> vector of sample points in order x, y, z
80 grid_type sampled_grid;
81 } density;
82
83 /// Timing structure
84 struct times_t {
85 /** Constructor for struct times_t, sets all to zero.
86 *
87 */
88 times_t();
89
90 double walltime;
91 double cputime;
92 double flops;
93 } times;
94
95private:
96 friend class boost::serialization::access;
97 // serialization
98 template <typename Archive>
99 void serialize(Archive& ar, const unsigned int version)
100 {
101 ar & energies.total;
102 ar & energies.nuclear_repulsion;
103 ar & energies.electron_coulomb;
104 ar & energies.electron_exchange;
105 ar & energies.correlation;
106 ar & energies.overlap;
107 ar & energies.kinetic;
108 ar & energies.hcore;
109 ar & energies.eigenvalues;
110 ar & forces;
111 int i;
112 for (int i=0; i<3; ++i)
113 ar & density.begin[i];
114 ar & density.size;
115 ar & density.level;
116 ar & density.sampled_grid;
117 ar & times.walltime;
118 ar & times.cputime;
119 ar & times.flops;
120 }
121};
122
123std::ostream & operator<<(std::ostream &ost, const MPQCData &data);
124
125#endif /* MPQCDATA_HPP_ */
Note: See TracBrowser for help on using the repository browser.