source: src/Helpers/defs.cpp@ 6ff62c

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 6ff62c was 94d5ac6, checked in by Frederik Heber <heber@…>, 12 years ago

FIX: As we use GSL internally, we are as of now required to use GPL v2 license.

  • GNU Scientific Library is used at every place in the code, especially the sub-package LinearAlgebra is based on it which in turn is used really everywhere in the remainder of MoleCuilder. Hence, we have to use the GPL license for the whole of MoleCuilder. In effect, GPL's COPYING was present all along and stated the terms of the GPL v2 license.
  • Hence, I added the default GPL v2 disclaimer to every source file and removed the note about a (actually missing) LICENSE file.
  • also, I added a help-redistribute action which again gives the disclaimer of the GPL v2.
  • also, I changed in the disclaimer that is printed at every program start in builder_init.cpp.
  • TEST: Added check on GPL statement present in every module to test CodeChecks project-disclaimer.
  • Property mode set to 100644
File size: 5.1 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * defs.cpp
25 *
26 * Created on: Aug 7, 2010
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35#include "CodePatterns/MemDebug.hpp"
36
37#include "Helpers/defs.hpp"
38
39const double MYEPSILON=1e-13; //!< machine epsilon precision
40const double AtomicLengthToAngstroem = 0.529177249; //!< conversion factor from atomic length/bohrradius to angstroem
41const double AtomicEnergyToKelvin = 315774.67; //!< conversion factor from atomic energy to kelvin via boltzmann factor
42const double KelvinToAtomicTemperature = 3.1668152e-06; //!< conversion factor for Kelvin to atomic temperature (Hartree over k_B)
43const double KelvinToeV = 8.6173422e-05; //!< conversion factor for Kelvin to Ht (k_B * T = energy), thus Boltzmann constant in eV/K
44const double AtomicMassUnitsToeV = 931494088.; //!< conversion factor for atomic weight in units to mass in eV
45const double AtomicMassUnitsToHt = 34480864.; //!< conversion factor for atomic weight in units to mass in Ht (protonmass/electronmass * electron_mass_in_Ht
46const double ElectronMass_Ht = 18778.865; //!< electron mass in Ht
47const double ElectronMass_eV = 510998.903; //!< electron mass in eV
48const double Units2Electronmass = (AtomicMassUnitsToeV/ElectronMass_eV); //!< atomic mass unit in eV/ electron mass in eV = 1 822.88863
49const double Atomictime2Femtoseconds = 0.024188843; //!< Atomictime in fs
50
51const char* VERSIONSTRING = "v1.0";
52
53const char* LocalPath="./";
54
55// various standard filenames
56const char *DEFAULTCONFIG = "main_pcp_linux"; //!< default filename of config file
57const char *CONVEXENVELOPE = "ConvexEnvelope.dat"; //!< default filename of convex envelope tecplot data file
58const char *KEYSETFILE = "KeySets.dat"; //!< default filename of BOSSANOVA key sets file
59const char *ADJACENCYFILE = "Adjacency.dat"; //!< default filename of BOSSANOVA adjacancy file
60const char *TEFACTORSFILE = "TE-Factors.dat"; //!< default filename of BOSSANOVA total energy factors file
61const char *FORCESFILE = "Forces-Factors.dat"; //!< default filename of BOSSANOVA force factors file
62const char *HCORRECTIONSUFFIX = "Hcorrection.dat"; //!< default filename of BOSSANOVA H correction file (unwanted saturation interaction)
63const char *FITCONSTANTSUFFIX = "FitConstant.dat"; //!< suffix of default filename of BOSSANOVA fit constants file (unwanted saturation interaction)
64const char *SHIELDINGSUFFIX = "sigma_all.csv"; //!< default filename of BOSSANOVA shieldings file
65const char *SHIELDINGPASSUFFIX = "sigma_all_PAS.csv"; //!< default filename of BOSSANOVA shieldings PAS file
66const char *ORDERATSITEFILE = "OrderAtSite.dat"; //!< default filename of BOSSANOVA Bond Order at each atom file
67const char *ENERGYPERFRAGMENT = "EnergyPerFragment"; //!< default filename of BOSSANOVA Energy contribution Per Fragment file
68const char *FRAGMENTPREFIX = "BondFragment"; //!< default filename prefix of BOSSANOVA fragment config and directories
69const char *STANDARDCONFIG = "unknown.conf"; //!< default filename of standard config file
70const char *STANDARDELEMENTSDB = "elements.db"; //!< default filename of elements data base with masses, Z, VanDerWaals radii, ...
71const char *STANDARDELECTRONEGATIVITYDB = "electronegativity.db"; //!< default filename of electronegativity per element number data base
72const char *STANDARDVALENCEDB = "valence.db"; //!< default filename of valence number per element database
73const char *STANDARDORBITALDB = "orbitals.db"; //!< default filename of orbitals per element database
74const char *STANDARDHBONDDISTANCEDB = "Hbonddistance.db"; //!< default filename of typial bond distance to hydrogen database
75const char *STANDARDHBONDANGLEDB = "Hbondangle.db"; //!< default filename of typial bond angle to hydrogen database
76const char *STANDARDCOLORDB = "color.db"; //!< default filename of typial bond angle to hydrogen database
77
78// some values
79const double SOLVENTDENSITY_A = 0.6022142;
80const double SOLVENTDENSITY_a0 = 0.089238936;
81
82
83const int UPDATECOUNT = 10; //!< update ten sites per BOSSANOVA interval
84
85const int STD_MENU_LENGTH = 60;
86const char STD_MENU_TITLE_SPACER = '=';
87const char STD_SEPERATOR_SPACER = '-';
88
89const char *MOLECUILDER_NAME = "Molecuilder";
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