1 | /*
|
---|
2 | * Project: MoleCuilder
|
---|
3 | * Description: creates and alters molecular systems
|
---|
4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
|
---|
5 | *
|
---|
6 | *
|
---|
7 | * This file is part of MoleCuilder.
|
---|
8 | *
|
---|
9 | * MoleCuilder is free software: you can redistribute it and/or modify
|
---|
10 | * it under the terms of the GNU General Public License as published by
|
---|
11 | * the Free Software Foundation, either version 2 of the License, or
|
---|
12 | * (at your option) any later version.
|
---|
13 | *
|
---|
14 | * MoleCuilder is distributed in the hope that it will be useful,
|
---|
15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
|
---|
16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
---|
17 | * GNU General Public License for more details.
|
---|
18 | *
|
---|
19 | * You should have received a copy of the GNU General Public License
|
---|
20 | * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
|
---|
21 | */
|
---|
22 |
|
---|
23 | /*
|
---|
24 | * defs.cpp
|
---|
25 | *
|
---|
26 | * Created on: Aug 7, 2010
|
---|
27 | * Author: heber
|
---|
28 | */
|
---|
29 |
|
---|
30 | // include config.h
|
---|
31 | #ifdef HAVE_CONFIG_H
|
---|
32 | #include <config.h>
|
---|
33 | #endif
|
---|
34 |
|
---|
35 | #include "CodePatterns/MemDebug.hpp"
|
---|
36 |
|
---|
37 | #include "Helpers/defs.hpp"
|
---|
38 |
|
---|
39 | const double MYEPSILON=1e-13; //!< machine epsilon precision
|
---|
40 | const double AtomicLengthToAngstroem = 0.529177249; //!< conversion factor from atomic length/bohrradius to angstroem
|
---|
41 | const double AtomicEnergyToKelvin = 315774.67; //!< conversion factor from atomic energy to kelvin via boltzmann factor
|
---|
42 | const double KelvinToAtomicTemperature = 3.1668152e-06; //!< conversion factor for Kelvin to atomic temperature (Hartree over k_B)
|
---|
43 | const double KelvinToeV = 8.6173422e-05; //!< conversion factor for Kelvin to Ht (k_B * T = energy), thus Boltzmann constant in eV/K
|
---|
44 | const double AtomicMassUnitsToeV = 931494088.; //!< conversion factor for atomic weight in units to mass in eV
|
---|
45 | const double AtomicMassUnitsToHt = 34480864.; //!< conversion factor for atomic weight in units to mass in Ht (protonmass/electronmass * electron_mass_in_Ht
|
---|
46 | const double ElectronMass_Ht = 18778.865; //!< electron mass in Ht
|
---|
47 | const double ElectronMass_eV = 510998.903; //!< electron mass in eV
|
---|
48 | const double Units2Electronmass = (AtomicMassUnitsToeV/ElectronMass_eV); //!< atomic mass unit in eV/ electron mass in eV = 1 822.88863
|
---|
49 | const double Atomictime2Femtoseconds = 0.024188843; //!< Atomictime in fs
|
---|
50 |
|
---|
51 | const char* VERSIONSTRING = "v1.0";
|
---|
52 |
|
---|
53 | const char* LocalPath="./";
|
---|
54 |
|
---|
55 | // various standard filenames
|
---|
56 | const char *DEFAULTCONFIG = "main_pcp_linux"; //!< default filename of config file
|
---|
57 | const char *CONVEXENVELOPE = "ConvexEnvelope.dat"; //!< default filename of convex envelope tecplot data file
|
---|
58 | const char *KEYSETFILE = "KeySets.dat"; //!< default filename of BOSSANOVA key sets file
|
---|
59 | const char *ADJACENCYFILE = "Adjacency.dat"; //!< default filename of BOSSANOVA adjacancy file
|
---|
60 | const char *TEFACTORSFILE = "TE-Factors.dat"; //!< default filename of BOSSANOVA total energy factors file
|
---|
61 | const char *FORCESFILE = "Forces-Factors.dat"; //!< default filename of BOSSANOVA force factors file
|
---|
62 | const char *HCORRECTIONSUFFIX = "Hcorrection.dat"; //!< default filename of BOSSANOVA H correction file (unwanted saturation interaction)
|
---|
63 | const char *FITCONSTANTSUFFIX = "FitConstant.dat"; //!< suffix of default filename of BOSSANOVA fit constants file (unwanted saturation interaction)
|
---|
64 | const char *SHIELDINGSUFFIX = "sigma_all.csv"; //!< default filename of BOSSANOVA shieldings file
|
---|
65 | const char *SHIELDINGPASSUFFIX = "sigma_all_PAS.csv"; //!< default filename of BOSSANOVA shieldings PAS file
|
---|
66 | const char *ORDERATSITEFILE = "OrderAtSite.dat"; //!< default filename of BOSSANOVA Bond Order at each atom file
|
---|
67 | const char *ENERGYPERFRAGMENT = "EnergyPerFragment"; //!< default filename of BOSSANOVA Energy contribution Per Fragment file
|
---|
68 | const char *FRAGMENTPREFIX = "BondFragment"; //!< default filename prefix of BOSSANOVA fragment config and directories
|
---|
69 | const char *STANDARDCONFIG = "unknown.conf"; //!< default filename of standard config file
|
---|
70 | const char *STANDARDELEMENTSDB = "elements.db"; //!< default filename of elements data base with masses, Z, VanDerWaals radii, ...
|
---|
71 | const char *STANDARDELECTRONEGATIVITYDB = "electronegativity.db"; //!< default filename of electronegativity per element number data base
|
---|
72 | const char *STANDARDVALENCEDB = "valence.db"; //!< default filename of valence number per element database
|
---|
73 | const char *STANDARDORBITALDB = "orbitals.db"; //!< default filename of orbitals per element database
|
---|
74 | const char *STANDARDHBONDDISTANCEDB = "Hbonddistance.db"; //!< default filename of typial bond distance to hydrogen database
|
---|
75 | const char *STANDARDHBONDANGLEDB = "Hbondangle.db"; //!< default filename of typial bond angle to hydrogen database
|
---|
76 | const char *STANDARDCOLORDB = "color.db"; //!< default filename of typial bond angle to hydrogen database
|
---|
77 |
|
---|
78 | // some values
|
---|
79 | const double SOLVENTDENSITY_A = 0.6022142;
|
---|
80 | const double SOLVENTDENSITY_a0 = 0.089238936;
|
---|
81 |
|
---|
82 |
|
---|
83 | const int UPDATECOUNT = 10; //!< update ten sites per BOSSANOVA interval
|
---|
84 |
|
---|
85 | const int STD_MENU_LENGTH = 60;
|
---|
86 | const char STD_MENU_TITLE_SPACER = '=';
|
---|
87 | const char STD_SEPERATOR_SPACER = '-';
|
---|
88 |
|
---|
89 | const char *MOLECUILDER_NAME = "Molecuilder";
|
---|