| 1 | /* | 
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| 2 | * Project: MoleCuilder | 
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| 3 | * Description: creates and alters molecular systems | 
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| 4 | * Copyright (C)  2010-2012 University of Bonn. All rights reserved. | 
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| 5 | * | 
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| 6 | * | 
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| 7 | *   This file is part of MoleCuilder. | 
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| 8 | * | 
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| 9 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
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| 10 | *    it under the terms of the GNU General Public License as published by | 
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| 11 | *    the Free Software Foundation, either version 2 of the License, or | 
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| 12 | *    (at your option) any later version. | 
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| 13 | * | 
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| 14 | *    MoleCuilder is distributed in the hope that it will be useful, | 
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| 15 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
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| 16 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
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| 17 | *    GNU General Public License for more details. | 
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| 18 | * | 
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| 19 | *    You should have received a copy of the GNU General Public License | 
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| 20 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
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| 21 | */ | 
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| 22 |  | 
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| 23 | /* | 
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| 24 | * defs.cpp | 
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| 25 | * | 
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| 26 | *  Created on: Aug 7, 2010 | 
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| 27 | *      Author: heber | 
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| 28 | */ | 
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| 29 |  | 
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| 30 | // include config.h | 
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| 31 | #ifdef HAVE_CONFIG_H | 
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| 32 | #include <config.h> | 
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| 33 | #endif | 
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| 34 |  | 
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| 35 | #include "CodePatterns/MemDebug.hpp" | 
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| 36 |  | 
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| 37 | #include "Helpers/defs.hpp" | 
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| 38 |  | 
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| 39 | const double MYEPSILON=1e-13;   //!< machine epsilon precision | 
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| 40 | const double AtomicLengthToAngstroem = 0.529177249; //!< conversion factor from atomic length/bohrradius to angstroem | 
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| 41 | const double AtomicEnergyToKelvin = 315774.67;  //!< conversion factor from atomic energy to kelvin via boltzmann factor | 
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| 42 | const double KelvinToAtomicTemperature = 3.1668152e-06;    //!< conversion factor for Kelvin to atomic temperature (Hartree over k_B) | 
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| 43 | const double KelvinToeV = 8.6173422e-05;                   //!< conversion factor for Kelvin to Ht (k_B * T = energy), thus Boltzmann constant in eV/K | 
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| 44 | const double AtomicMassUnitsToeV = 931494088.;        //!< conversion factor for atomic weight in units to mass in eV | 
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| 45 | const double AtomicMassUnitsToHt = 34480864.;        //!< conversion factor for atomic weight in units to mass in Ht (protonmass/electronmass * electron_mass_in_Ht | 
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| 46 | const double ElectronMass_Ht = 18778.865;            //!< electron mass in Ht | 
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| 47 | const double ElectronMass_eV = 510998.903;           //!< electron mass in eV | 
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| 48 | const double Units2Electronmass = (AtomicMassUnitsToeV/ElectronMass_eV); //!< atomic mass unit in eV/ electron mass in eV = 1 822.88863 | 
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| 49 | const double Atomictime2Femtoseconds = 0.024188843;     //!< Atomictime in fs | 
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| 50 |  | 
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| 51 | const char* VERSIONSTRING = "v1.0"; | 
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| 52 |  | 
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| 53 | const char* LocalPath="./"; | 
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| 54 |  | 
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| 55 | // various standard filenames | 
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| 56 | const char *DEFAULTCONFIG = "main_pcp_linux";    //!< default filename of config file | 
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| 57 | const char *CONVEXENVELOPE = "ConvexEnvelope.dat";    //!< default filename of convex envelope tecplot data file | 
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| 58 | const char *KEYSETFILE = "KeySets.dat";    //!< default filename of BOSSANOVA key sets file | 
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| 59 | const char *ADJACENCYFILE = "Adjacency.dat";    //!< default filename of BOSSANOVA adjacancy file | 
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| 60 | const char *TEFACTORSFILE = "TE-Factors.dat";    //!< default filename of BOSSANOVA total energy factors file | 
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| 61 | const char *FORCESFILE = "Forces-Factors.dat";    //!< default filename of BOSSANOVA force factors file | 
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| 62 | const char *HCORRECTIONSUFFIX = "Hcorrection.dat";    //!< default filename of BOSSANOVA H correction file (unwanted saturation interaction) | 
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| 63 | const char *FITCONSTANTSUFFIX = "FitConstant.dat";   //!< suffix of default filename of BOSSANOVA fit constants file (unwanted saturation interaction) | 
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| 64 | const char *SHIELDINGSUFFIX = "sigma_all.csv";                //!< default filename of BOSSANOVA shieldings file | 
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| 65 | const char *SHIELDINGPASSUFFIX = "sigma_all_PAS.csv";                 //!< default filename of BOSSANOVA shieldings PAS file | 
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| 66 | const char *ORDERATSITEFILE = "OrderAtSite.dat";    //!< default filename of BOSSANOVA Bond Order at each atom file | 
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| 67 | const char *ENERGYPERFRAGMENT = "EnergyPerFragment";    //!< default filename of BOSSANOVA Energy contribution Per Fragment file | 
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| 68 | const char *FRAGMENTPREFIX = "BondFragment";    //!< default filename prefix of BOSSANOVA fragment config and directories | 
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| 69 | const char *STANDARDCONFIG = "unknown.conf";    //!< default filename of standard config file | 
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| 70 | const char *STANDARDELEMENTSDB = "elements.db";    //!< default filename of elements data base with masses, Z, VanDerWaals radii, ... | 
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| 71 | const char *STANDARDELECTRONEGATIVITYDB = "electronegativity.db";    //!< default filename of electronegativity per element number data base | 
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| 72 | const char *STANDARDVALENCEDB = "valence.db";    //!< default filename of valence number per element database | 
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| 73 | const char *STANDARDORBITALDB = "orbitals.db";    //!< default filename of orbitals per element database | 
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| 74 | const char *STANDARDHBONDDISTANCEDB = "Hbonddistance.db";    //!< default filename of typial bond distance to hydrogen database | 
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| 75 | const char *STANDARDHBONDANGLEDB = "Hbondangle.db";    //!< default filename of typial bond angle to hydrogen database | 
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| 76 | const char *STANDARDCOLORDB = "color.db";    //!< default filename of typial bond angle to hydrogen database | 
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| 77 |  | 
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| 78 | // some values | 
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| 79 | const double SOLVENTDENSITY_A = 0.6022142; | 
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| 80 | const double SOLVENTDENSITY_a0 = 0.089238936; | 
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| 81 |  | 
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| 82 |  | 
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| 83 | const int UPDATECOUNT = 10;  //!< update ten sites per BOSSANOVA interval | 
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| 84 |  | 
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| 85 | const int STD_MENU_LENGTH = 60; | 
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| 86 | const char STD_MENU_TITLE_SPACER = '='; | 
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| 87 | const char STD_SEPERATOR_SPACER = '-'; | 
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| 88 |  | 
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| 89 | const char *MOLECUILDER_NAME = "Molecuilder"; | 
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