source: src/FunctionApproximation/TrainingData.hpp@ 2ae400

/*
 * TrainingData.hpp
 *
 *  Created on: 15.10.2012
 *      Author: heber
 */

#ifndef TRAININGDATA_HPP_
#define TRAININGDATA_HPP_

// include config.h
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif

#include <iosfwd>
#include <boost/function.hpp>

#include "Fragmentation/Homology/HomologyContainer.hpp"
#include "FunctionApproximation/FunctionApproximation.hpp"
#include "FunctionApproximation/FunctionModel.hpp"

/** This class encapsulates the training data for a given potential function
 * to learn.
 *
 * The data is added piece-wise by calling the operator() with a specific
 * Fragment.
 *
 * TrainingData::operator() takes the set of all possible pair-wise  distances
 * (InputVector_t) and transforms it via the given filter into a list of subsets
 * of distances (FilteredInputVector_t) that is feedable to the model.
 *
 */
class TrainingData
{
public:
  //!> typedef for a range within the HomologyContainer at which fragments to look at
  typedef std::pair<
      HomologyContainer::const_iterator,
      HomologyContainer::const_iterator> range_t;
  //!> Training tuple input vector pair
  typedef FunctionApproximation::inputs_t InputVector_t;
  //!> Training tuple modified input vector pair
  typedef FunctionApproximation::filtered_inputs_t FilteredInputVector_t;
  //!> Training tuple output vector pair
  typedef FunctionApproximation::outputs_t OutputVector_t;
  //!> Typedef for a table with columns of all distances and the energy
  typedef std::vector< std::vector<double> > DistanceEnergyTable_t;
  //!> Typedef for a map of each fragment with error.
  typedef std::multimap< double, size_t > L2ErrorConfigurationIndexMap_t;

public:
  /** Constructor for class TrainingData.
   *
   */
  explicit TrainingData(const FunctionModel::filter_t &_filter) :
      filter(_filter)
  {}

  /** Destructor for class TrainingData.
   *
   */
  ~TrainingData()
  {}

  /** We go through the given \a range of homologous fragments and call
   * TrainingData::filter on them in order to gather the distance and
   * the energy value, stored internally.
   *
   * \param range given range within a HomologyContainer of homologous fragments
   */
  void operator()(const range_t &range);

  /** Getter for const access to internal training data inputs.
   *
   * \return const ref to training tuple of input vector
   */
  const FilteredInputVector_t& getTrainingInputs() const {
    return ArgumentVector;
  }

  /** Getter for const access to internal list of all pair-wise distances.
   *
   * \return const ref to all arguments
   */
  const InputVector_t& getAllArguments() const {
    return DistanceVector;
  }

  /** Getter for const access to internal training data outputs.
   *
   * \return const ref to training tuple of output vector
   */
  const OutputVector_t& getTrainingOutputs() const {
    return EnergyVector;
  }

  /** Returns the average of each component over all OutputVectors.
   *
   * This is useful for initializing the offset of the potential.
   *
   * @return average output vector
   */
  const FunctionModel::results_t getTrainingOutputAverage() const;

  /** Calculate the L2 error of a given \a model against the stored training data.
   *
   * \param model model whose L2 error to calculate
   * \return sum of squared differences at training tuples
   */
  const double getL2Error(const FunctionModel &model) const;

  /** Calculate the Lmax error of a given \a model against the stored training data.
   *
   * \param model model whose Lmax error to calculate
   * \return maximum difference over all training tuples
   */
  const double getLMaxError(const FunctionModel &model) const;

  /** Calculate the Lmax error of a given \a model against the stored training data.
   *
   * \param model model whose Lmax error to calculate
   * \param range given range within a HomologyContainer of homologous fragments
   * \return map with L2 error per configuration
   */
  const L2ErrorConfigurationIndexMap_t getWorstFragmentMap(
      const FunctionModel &model,
      const range_t &range) const;

  /** Creates a table of columns with all distances and the energy.
   *
   * \return array with first columns containing distances, last column energy
   */
  const DistanceEnergyTable_t getDistanceEnergyTable() const;

private:
  // prohibit use of default constructor, as we always require extraction functor.
  TrainingData();

private:
  //!> private training data vector
  InputVector_t DistanceVector;
  OutputVector_t EnergyVector;
  //!> list of all filtered arguments over all tuples
  FilteredInputVector_t ArgumentVector;
  //!> function to be used for training input data extraction from a fragment
  const FunctionModel::filter_t filter;
};

// print training data for debugging
std::ostream &operator<<(std::ostream &out, const TrainingData &data);

#endif /* TRAININGDATA_HPP_ */