source: src/FunctionApproximation/FunctionModel.hpp@ 7b019a

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 Candidate_v1.7.0 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 7b019a was 7b019a, checked in by Frederik Heber <heber@…>, 13 years ago

Extended FunctionModel by getFragmentSpecificExtractor() definition.

  • shifted extractor_t from TrainingData to FunctionModel.
  • implemented function for every specific potential.
  • this is preparatory for generalizing function approximation in LevMartester.
  • we make use of the newly introduced extractors in the potentials and the required number of charges is ASSERT'd.
  • Property mode set to 100644
File size: 3.9 KB
Line 
1/*
2 * FunctionModel.hpp
3 *
4 * Created on: 02.10.2012
5 * Author: heber
6 */
7
8#ifndef FUNCTIONMODEL_HPP_
9#define FUNCTIONMODEL_HPP_
10
11// include config.h
12#ifdef HAVE_CONFIG_H
13#include <config.h>
14#endif
15
16#include <boost/function.hpp>
17#include <vector>
18
19#include "FunctionApproximation/FunctionArgument.hpp"
20
21class Fragment;
22
23/** This class represents the interface for a given function to model a
24 * high-dimensional data set in FunctionApproximation.
25 *
26 * As the parameters may be stored differently, the interface functions for
27 * getting and setting them are as light-weight (and not speed-optimized)
28 * as possible.
29 *
30 */
31class FunctionModel
32{
33public:
34 //!> typedef for a single parameter degree of freedom of the function
35 typedef double parameter_t;
36 //!> typedef for the whole set of parameters of the function
37 typedef std::vector<parameter_t> parameters_t;
38 //!> typedef for the argument vector as input to the function
39 typedef std::vector<argument_t> arguments_t;
40 //!> typedef for a single result degree of freedom
41 typedef double result_t;
42 //!> typedef for the result vector as returned by the function
43 typedef std::vector<result_t> results_t;
44 //!> typedef for a function containing how to extract required information from a Fragment.
45 typedef boost::function< arguments_t (const Fragment &, const size_t)> extractor_t;
46 //!> typedef for a vector of particle tyoes
47 typedef std::vector< double > charges_t;
48
49public:
50 FunctionModel() {}
51 virtual ~FunctionModel() {}
52
53 /** Setter for the parameters of the model function.
54 *
55 * \param params set of parameters to set
56 */
57 virtual void setParameters(const parameters_t &params)=0;
58
59 /** Getter for the parameters of this model function.
60 *
61 * \return current set of parameters of the model function
62 */
63 virtual parameters_t getParameters() const=0;
64
65// /** Sets the parameter randomly within the sensible range of each parameter.
66// *
67// */
68// virtual void setParametersToRandomInitialValues() const=0;
69
70 /** Getter for the number of parameters of this model function.
71 *
72 * \return number of parameters
73 */
74 virtual size_t getParameterDimension() const=0;
75
76 /** Evaluates the function with the given \a arguments and the current set of
77 * parameters.
78 *
79 * \param arguments set of arguments as input variables to the function
80 * \return result of the function
81 */
82 virtual results_t operator()(const arguments_t &arguments) const=0;
83
84 /** Evaluates the derivative of the function with the given \a arguments
85 * with respect to a specific parameter indicated by \a index.
86 *
87 * \param arguments set of arguments as input variables to the function
88 * \param index derivative of which parameter
89 * \return result vector containing the derivative with respect to the given
90 * input
91 */
92 virtual results_t parameter_derivative(const arguments_t &arguments, const size_t index) const=0;
93
94 /** States whether lower and upper boundaries should be used to constraint
95 * the parameter search for this function model.
96 *
97 * \return true - constraints should be used, false - else
98 */
99 virtual bool isBoxConstraint() const=0;
100
101 /** Returns a vector which are the lower boundaries for each parameter_t
102 * of this FunctionModel.
103 *
104 * \return vector of parameter_t resembling lowest allowed values
105 */
106 virtual parameters_t getLowerBoxConstraints() const=0;
107
108 /** Returns a vector which are the upper boundaries for each parameter_t
109 * of this FunctionModel.
110 *
111 * \return vector of parameter_t resembling highest allowed values
112 */
113 virtual parameters_t getUpperBoxConstraints() const=0;
114
115 /** Returns a bound function to be used with TrainingData, extracting distances
116 * from a Fragment.
117 *
118 * \param charges vector of charges to be extracted
119 * \return bound function extracting distances from a fragment
120 */
121 virtual extractor_t getFragmentSpecificExtractor(const charges_t &charges) const=0;
122};
123
124#endif /* FUNCTIONMODEL_HPP_ */
Note: See TracBrowser for help on using the repository browser.