| 1 | /*
 | 
|---|
| 2 |  * Project: MoleCuilder
 | 
|---|
| 3 |  * Description: creates and alters molecular systems
 | 
|---|
| 4 |  * Copyright (C)  2012 University of Bonn. All rights reserved.
 | 
|---|
| 5 |  * Copyright (C)  2013 Frederik Heber. All rights reserved.
 | 
|---|
| 6 |  * 
 | 
|---|
| 7 |  *
 | 
|---|
| 8 |  *   This file is part of MoleCuilder.
 | 
|---|
| 9 |  *
 | 
|---|
| 10 |  *    MoleCuilder is free software: you can redistribute it and/or modify
 | 
|---|
| 11 |  *    it under the terms of the GNU General Public License as published by
 | 
|---|
| 12 |  *    the Free Software Foundation, either version 2 of the License, or
 | 
|---|
| 13 |  *    (at your option) any later version.
 | 
|---|
| 14 |  *
 | 
|---|
| 15 |  *    MoleCuilder is distributed in the hope that it will be useful,
 | 
|---|
| 16 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
|---|
| 17 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
|---|
| 18 |  *    GNU General Public License for more details.
 | 
|---|
| 19 |  *
 | 
|---|
| 20 |  *    You should have received a copy of the GNU General Public License
 | 
|---|
| 21 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
 | 
|---|
| 22 |  */
 | 
|---|
| 23 | 
 | 
|---|
| 24 | /*
 | 
|---|
| 25 |  * IndexSetContainer.cpp
 | 
|---|
| 26 |  *
 | 
|---|
| 27 |  *  Created on: Aug 2, 2012
 | 
|---|
| 28 |  *      Author: heber
 | 
|---|
| 29 |  */
 | 
|---|
| 30 | 
 | 
|---|
| 31 | 
 | 
|---|
| 32 | // include config.h
 | 
|---|
| 33 | #ifdef HAVE_CONFIG_H
 | 
|---|
| 34 | #include <config.h>
 | 
|---|
| 35 | #endif
 | 
|---|
| 36 | 
 | 
|---|
| 37 | #include "CodePatterns/MemDebug.hpp"
 | 
|---|
| 38 | 
 | 
|---|
| 39 | #include "IndexSetContainer.hpp"
 | 
|---|
| 40 | 
 | 
|---|
| 41 | #include <iterator>
 | 
|---|
| 42 | 
 | 
|---|
| 43 | #include "CodePatterns/Log.hpp"
 | 
|---|
| 44 | 
 | 
|---|
| 45 | #include "Fragmentation/Summation/IndexSet.hpp"
 | 
|---|
| 46 | #include "Fragmentation/KeySetsContainer.hpp"
 | 
|---|
| 47 | 
 | 
|---|
| 48 | IndexSet::ptr IndexSetContainer::createSuperSet(const KeySetsContainer &_keysets) const
 | 
|---|
| 49 | {
 | 
|---|
| 50 |   // create superset
 | 
|---|
| 51 |   IndexSet::ptr _AllIndices(new IndexSet);
 | 
|---|
| 52 |   for (KeySetsContainer::ArrayOfIntVectors::const_iterator iter = _keysets.KeySets.begin();
 | 
|---|
| 53 |       iter != _keysets.KeySets.end(); ++iter)
 | 
|---|
| 54 |     for(KeySetsContainer::IntVector::const_iterator keyiter = (*iter).begin();
 | 
|---|
| 55 |         keyiter != (*iter).end(); ++keyiter) {
 | 
|---|
| 56 |       if (*keyiter != -1)
 | 
|---|
| 57 |         _AllIndices->insert((Index_t)*keyiter);
 | 
|---|
| 58 |     }
 | 
|---|
| 59 |   LOG(2, "DEBUG: AllIndices is " << *_AllIndices << ".");
 | 
|---|
| 60 | 
 | 
|---|
| 61 |   return _AllIndices;
 | 
|---|
| 62 | }
 | 
|---|
| 63 | 
 | 
|---|
| 64 | IndexSet::ptr IndexSetContainer::createSuperSet(const std::vector<IndexSet> &_container) const
 | 
|---|
| 65 | {
 | 
|---|
| 66 |   // create superset
 | 
|---|
| 67 |   IndexSet::ptr _AllIndices(new IndexSet);
 | 
|---|
| 68 |   for (std::vector<IndexSet>::const_iterator iter = _container.begin();
 | 
|---|
| 69 |       iter != _container.end(); ++iter)
 | 
|---|
| 70 |     for(IndexSet::const_iterator keyiter = (*iter).begin();
 | 
|---|
| 71 |         keyiter != (*iter).end(); ++keyiter) {
 | 
|---|
| 72 |       if (*keyiter != -1)
 | 
|---|
| 73 |         _AllIndices->insert((Index_t)*keyiter);
 | 
|---|
| 74 |     }
 | 
|---|
| 75 |   LOG(2, "DEBUG: AllIndices is " << *_AllIndices << ".");
 | 
|---|
| 76 | 
 | 
|---|
| 77 |   return _AllIndices;
 | 
|---|
| 78 | }
 | 
|---|
| 79 | 
 | 
|---|
| 80 | IndexSet::ptr IndexSetContainer::createSuperSet(const std::vector<IndexSet::ptr> &_container) const
 | 
|---|
| 81 | {
 | 
|---|
| 82 |   // create superset
 | 
|---|
| 83 |   IndexSet::ptr _AllIndices(new IndexSet);
 | 
|---|
| 84 |   for (std::vector<IndexSet::ptr>::const_iterator iter = _container.begin();
 | 
|---|
| 85 |       iter != _container.end(); ++iter)
 | 
|---|
| 86 |     for(IndexSet::const_iterator keyiter = (*iter)->begin();
 | 
|---|
| 87 |         keyiter != (*iter)->end(); ++keyiter) {
 | 
|---|
| 88 |       if (*keyiter != -1)
 | 
|---|
| 89 |         _AllIndices->insert((Index_t)*keyiter);
 | 
|---|
| 90 |     }
 | 
|---|
| 91 |   LOG(2, "DEBUG: AllIndices is " << *_AllIndices << ".");
 | 
|---|
| 92 | 
 | 
|---|
| 93 |   return _AllIndices;
 | 
|---|
| 94 | }
 | 
|---|
| 95 | 
 | 
|---|
| 96 | IndexSetContainer::IndexSetContainer(const KeySetsContainer &_keysets) :
 | 
|---|
| 97 |      AllIndices(createSuperSet(_keysets))
 | 
|---|
| 98 | {
 | 
|---|
| 99 |   const size_t SupersetSize = AllIndices->size();
 | 
|---|
| 100 |   // create container with all keysets
 | 
|---|
| 101 |   for (KeySetsContainer::ArrayOfIntVectors::const_iterator iter = _keysets.KeySets.begin();
 | 
|---|
| 102 |       iter != _keysets.KeySets.end(); ++iter) {
 | 
|---|
| 103 |     // create the IndexSets ...
 | 
|---|
| 104 |     IndexSet tempset;
 | 
|---|
| 105 |     for(KeySetsContainer::IntVector::const_iterator keyiter = (*iter).begin();
 | 
|---|
| 106 |         keyiter != (*iter).end(); ++keyiter)
 | 
|---|
| 107 |       if (*keyiter != -1)
 | 
|---|
| 108 |         tempset.insert((Index_t)*keyiter);
 | 
|---|
| 109 |     // ... and insert, making sure that super set is AllIndices when present
 | 
|---|
| 110 |     if (tempset.size() < SupersetSize)
 | 
|---|
| 111 |       insert(tempset);
 | 
|---|
| 112 |     else
 | 
|---|
| 113 |       insert(AllIndices);
 | 
|---|
| 114 |   }
 | 
|---|
| 115 | }
 | 
|---|
| 116 | 
 | 
|---|
| 117 | size_t IndexSetContainer::countSetsTillLevel(const size_t level) const
 | 
|---|
| 118 | {
 | 
|---|
| 119 |   // check if any sets are present
 | 
|---|
| 120 |   if (getContainer().empty())
 | 
|---|
| 121 |     return 0;
 | 
|---|
| 122 |   // define ends of interval
 | 
|---|
| 123 |   SortedVector<IndexSet>::Container_t::const_iterator start = getContainer().begin();
 | 
|---|
| 124 |   SortedVector<IndexSet>::Container_t::const_iterator end = --getContainer().end();
 | 
|---|
| 125 |   // check whether all are smaller
 | 
|---|
| 126 |   if ((*end)->size() <= level)
 | 
|---|
| 127 |     return getContainer().size();
 | 
|---|
| 128 |   // check whether all are larger
 | 
|---|
| 129 |   if ((*start)->size() > level)
 | 
|---|
| 130 |     return 0;
 | 
|---|
| 131 |   // continue as long as interval has more than one element
 | 
|---|
| 132 |   while (std::distance(start, end) > 1) {
 | 
|---|
| 133 |     // create iterator in between
 | 
|---|
| 134 |     SortedVector<IndexSet>::Container_t::const_iterator midpoint = start;
 | 
|---|
| 135 |     std::advance( midpoint, std::distance(start, end)/2 );
 | 
|---|
| 136 |     // check iter and half the interval
 | 
|---|
| 137 |     if ((*midpoint)->size() <= level)
 | 
|---|
| 138 |       start = midpoint;
 | 
|---|
| 139 |     else
 | 
|---|
| 140 |       end = midpoint;
 | 
|---|
| 141 |   }
 | 
|---|
| 142 |   return std::distance(getContainer().begin(), end);
 | 
|---|
| 143 | }
 | 
|---|