source: src/Fragmentation/Summation/Converter/DataConverter.hpp@ a676f9

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable v1.3.14
Last change on this file since a676f9 was 5c867e, checked in by Frederik Heber <heber@…>, 12 years ago

Added new SetValue Eigenvalues to just add up the set of eigenvalues.

  • Property mode set to 100644
File size: 7.6 KB
Line 
1/*
2 * DataConverter.hpp
3 *
4 * Created on: Aug 27, 2012
5 * Author: heber
6 */
7
8#ifndef DATACONVERTER_HPP_
9#define DATACONVERTER_HPP_
10
11
12// include config.h
13#ifdef HAVE_CONFIG_H
14#include <config.h>
15#endif
16
17#include <map>
18#include <boost/fusion/sequence.hpp>
19
20#include "CodePatterns/Assert.hpp"
21
22#ifdef HAVE_JOBMARKET
23#include "JobMarket/types.hpp"
24#else
25typedef size_t JobId_t;
26#endif
27
28#include "Fragmentation/KeySetsContainer.hpp"
29#include "Fragmentation/Summation/SetValues/Eigenvalues.hpp"
30#include "Fragmentation/Summation/SetValues/Histogram.hpp"
31#include "Fragmentation/Summation/SetValues/Fragment.hpp"
32#include "Fragmentation/Summation/SetValues/IndexedVectors.hpp"
33
34#include "Fragmentation/Summation/Containers/MPQCData.hpp"
35#include "Fragmentation/Summation/Containers/MPQCDataFused.hpp"
36#include "Fragmentation/Summation/Containers/MPQCDataMap.hpp"
37#ifdef HAVE_VMG
38#include "Fragmentation/Summation/Containers/VMGData.hpp"
39#include "Fragmentation/Summation/Containers/VMGDataFused.hpp"
40#include "Fragmentation/Summation/Containers/VMGDataMap.hpp"
41#endif
42
43template <typename source, typename dest>
44inline void convertDataTo(
45 const std::map<JobId_t, source> &fragmentData,
46 std::map<JobId_t, dest> &MPQCData_fused)
47{
48 MPQCData_fused.clear();
49}
50
51template <>
52inline void convertDataTo<MPQCData, MPQCDataEnergyMap_t>(
53 const std::map<JobId_t, MPQCData> &fragmentData,
54 std::map<JobId_t, MPQCDataEnergyMap_t> &MPQCData_Energy_fused)
55{
56 // energy_t
57 MPQCData_Energy_fused.clear();
58 for(std::map<JobId_t, MPQCData>::const_iterator dataiter = fragmentData.begin();
59 dataiter != fragmentData.end(); ++dataiter) {
60 const MPQCData &extractedData = dataiter->second;
61 LOG(4, "DEBUG: Current extracted Data is " << extractedData << ".");
62 MPQCDataEnergyMap_t instance;
63 boost::fusion::at_key<MPQCDataFused::energy_total>(instance) = extractedData.energies.total;
64 boost::fusion::at_key<MPQCDataFused::energy_nuclear_repulsion>(instance) = extractedData.energies.nuclear_repulsion;
65 boost::fusion::at_key<MPQCDataFused::energy_electron_coulomb>(instance) = extractedData.energies.electron_coulomb;
66 boost::fusion::at_key<MPQCDataFused::energy_electron_exchange>(instance) = extractedData.energies.electron_exchange;
67 boost::fusion::at_key<MPQCDataFused::energy_correlation>(instance) = extractedData.energies.correlation;
68 boost::fusion::at_key<MPQCDataFused::energy_overlap>(instance) = extractedData.energies.overlap;
69 boost::fusion::at_key<MPQCDataFused::energy_kinetic>(instance) = extractedData.energies.kinetic;
70 boost::fusion::at_key<MPQCDataFused::energy_hcore>(instance) = extractedData.energies.hcore;
71 boost::fusion::at_key<MPQCDataFused::energy_eigenvalues>(instance) = extractedData.energies.eigenvalues;
72 boost::fusion::at_key<MPQCDataFused::energy_eigenhistogram>(instance) = extractedData.energies.eigenvalues;
73 MPQCData_Energy_fused.insert( std::make_pair(dataiter->first, instance) );
74 }
75}
76
77#ifdef HAVE_VMG
78template <>
79inline void convertDataTo<VMGData, VMGDataMap_t>(
80 const std::map<JobId_t, VMGData> &longrangeData,
81 std::map<JobId_t, VMGDataMap_t> &VMGData_fused)
82{
83 // energy_t
84 VMGData_fused.clear();
85 for(std::map<JobId_t, VMGData>::const_iterator dataiter = longrangeData.begin();
86 dataiter != longrangeData.end(); ++dataiter) {
87 const VMGData &extractedData = dataiter->second;
88 LOG(4, "DEBUG: Current extracted Data is " << extractedData << ".");
89 VMGDataMap_t instance;
90 boost::fusion::at_key<VMGDataFused::sampled_potential>(instance) = extractedData.sampled_potential;
91 boost::fusion::at_key<VMGDataFused::energy_potential>(instance) = extractedData.sampled_potential.integral();
92 boost::fusion::at_key<VMGDataFused::energy_long>(instance) = extractedData.e_long;
93 VMGData_fused.insert( std::make_pair(dataiter->first, instance) );
94 }
95}
96#endif
97
98inline void convertMPQCDatatoForceMap(
99 const std::map<JobId_t, MPQCData> &fragmentData,
100 const KeySetsContainer &ForceKeySet,
101 std::map<JobId_t, MPQCDataForceMap_t> &MPQCData_Force_fused)
102{
103 // forces
104 ASSERT( ForceKeySet.KeySets.size() == fragmentData.size(),
105 "FragmentationAutomationAction::performCall() - indices and fragmentData differ in size.");
106 MPQCData_Force_fused.clear();
107 std::map<JobId_t, MPQCData>::const_iterator dataiter = fragmentData.begin();
108 KeySetsContainer::ArrayOfIntVectors::const_iterator arrayiter = ForceKeySet.KeySets.begin();
109 for(;dataiter != fragmentData.end(); ++dataiter, ++arrayiter) {
110 const MPQCData &extractedData = dataiter->second;
111 LOG(4, "DEBUG: Current extracted Data is " << extractedData << ".");
112 MPQCDataForceMap_t instance;
113 // must convert int to index_t
114 IndexedVectors::indices_t indices(arrayiter->begin(), arrayiter->end());
115 boost::fusion::at_key<MPQCDataFused::forces>(instance) =
116 IndexedVectors(indices, extractedData.forces);
117 MPQCData_Force_fused.insert( std::make_pair(dataiter->first, instance) );
118 }
119}
120
121template <>
122inline void convertDataTo<MPQCData, MPQCDataGridMap_t>(
123 const std::map<JobId_t, MPQCData> &fragmentData,
124 std::map<JobId_t, MPQCDataGridMap_t> &MPQCData_Grid_fused)
125{
126 // sampled_grid
127 MPQCData_Grid_fused.clear();
128 for(std::map<JobId_t, MPQCData>::const_iterator dataiter = fragmentData.begin();
129 dataiter != fragmentData.end(); ++dataiter) {
130 const MPQCData &extractedData = dataiter->second;
131 LOG(4, "DEBUG: Current extracted Data is " << extractedData << ".");
132 MPQCDataGridMap_t instance;
133 boost::fusion::at_key<MPQCDataFused::sampled_grid>(instance) = extractedData.sampled_grid;
134 MPQCData_Grid_fused.insert( std::make_pair(dataiter->first, instance) );
135 }
136}
137
138template <>
139inline void convertDataTo<MPQCData, MPQCDataFragmentMap_t>(
140 const std::map<JobId_t, MPQCData> &fragmentData,
141 std::map<JobId_t, MPQCDataFragmentMap_t> &MPQCData_Fragment_fused)
142{
143 // fragment
144 MPQCData_Fragment_fused.clear();
145 for(std::map<JobId_t, MPQCData>::const_iterator dataiter = fragmentData.begin();
146 dataiter != fragmentData.end(); ++dataiter) {
147 const MPQCData &extractedData = dataiter->second;
148 LOG(4, "DEBUG: Current extracted Data is " << extractedData << ".");
149 MPQCDataFragmentMap_t instance;
150 boost::fusion::at_key<MPQCDataFused::fragment>(instance) =
151 Fragment(extractedData.positions, extractedData.charges);
152 MPQCData_Fragment_fused.insert( std::make_pair(dataiter->first, instance) );
153 }
154}
155
156template <>
157inline void convertDataTo<MPQCData, MPQCDataTimeMap_t>(
158 const std::map<JobId_t, MPQCData> &fragmentData,
159 std::map<JobId_t, MPQCDataTimeMap_t> &MPQCData_Time_fused)
160{
161 // times
162 MPQCData_Time_fused.clear();
163 for(std::map<JobId_t, MPQCData>::const_iterator dataiter = fragmentData.begin();
164 dataiter != fragmentData.end(); ++dataiter) {
165 const MPQCData &extractedData = dataiter->second;
166 LOG(4, "DEBUG: Current extracted Data is " << extractedData << ".");
167 MPQCDataTimeMap_t instance;
168 boost::fusion::at_key<MPQCDataFused::times_total_walltime>(instance) = extractedData.times.total_walltime;
169 boost::fusion::at_key<MPQCDataFused::times_total_cputime>(instance) = extractedData.times.total_cputime;
170 boost::fusion::at_key<MPQCDataFused::times_total_flops>(instance) = extractedData.times.total_flops;
171 boost::fusion::at_key<MPQCDataFused::times_gather_walltime>(instance) = extractedData.times.gather_walltime;
172 boost::fusion::at_key<MPQCDataFused::times_gather_cputime>(instance) = extractedData.times.gather_cputime;
173 boost::fusion::at_key<MPQCDataFused::times_gather_flops>(instance) = extractedData.times.gather_flops;
174 MPQCData_Time_fused.insert( std::make_pair(dataiter->first, instance) );
175 }
176}
177
178
179#endif /* DATACONVERTER_HPP_ */
Note: See TracBrowser for help on using the repository browser.