Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | 
            Last change
 on this file since 0f5d38 was             e2925fd, checked in by Frederik Heber <heber@…>, 13 years ago           | 
        
        
          | 
             
Split long-range calculations into two parts to overcome E-N-potential problems. 
 
The general problem is that smeared-out nuclei charges cannot interact with 
electron charge densities as they always overlap, hence we always make a large 
error. The idea then is - as the potential energy is symmetric both 
densities - to flip from N-E to E-N, i.\,e. to take the electron potential and 
evaluate at nuclei positions instead of smeared-out nuclei charges with 
eletronic charge distribution. However, then we need to make two calculations 
for the four contributions: E-E, E-N and N-N, N-E (=E-N). 
 
- new enums SampleParticles_t eventually tells InterfaceVMGJob whether to
sample the nuclei charges onto the grid or not.
 - TreatGrid_t tells InterfaceVMGJob whether to actually add the electronic
charge onto the grid (this was added but is actually not required anymore).
 - FragmentationAutomationAction::performCall() now creates twice as many
long-range jobs. This requires two variables in VMGData for storing
integrated long-range energy: electron_long, nuclei_long, as both
calculations are combined into a single VMGData instance per fragment.
 - Summation of long-range contributions is split into three instead of formerly
two parts: electron (E-E), nuclei (N-N), and mixed (E-N). This allows to
easierly check their cancellation. This needs new member in fusion map
and name in printKeyNames.
 - naturally, the enums have to be passed a long way: VMGFragmentController,
VMGJob, VMGData.
 - VMGData now has serialization version 1 due to new entry.
 - we enhanced documentation in FragmentationLongRangeResults::operator()() of
how and what is summed per level.
 - FIX: InterfaceVMGJob::ImportRightHandSide() subtracted grid instead of
adding it. Now, we set correct sign of electron charge distribution in MPQC.
 - TESTFIX: Regression test AnalyseFragmentResults now has short- and long-range
part. Long-range part is only diff'ed when the compiled code has the
capabilities.
  
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| Rev | Line |   | 
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| [358ddb] | 1 | /*
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 | 2 |  * VMGDataFused.hpp
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 | 3 |  *
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 | 4 |  *  Created on: Aug 8, 2012
 | 
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 | 5 |  *      Author: heber
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 | 6 |  */
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 | 7 | 
 | 
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 | 8 | #ifndef VMGDATAFUSED_HPP_
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 | 9 | #define VMGDATAFUSED_HPP_
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 | 10 | 
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 | 11 | 
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 | 12 | // include config.h
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 | 13 | #ifdef HAVE_CONFIG_H
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 | 14 | #include <config.h>
 | 
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 | 15 | #endif
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 | 16 | 
 | 
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 | 17 | /** This namespace contains a key for each data member in MPQCData.
 | 
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 | 18 |  *
 | 
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 | 19 |  * We need these keys as enumeration of the data members to allow
 | 
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 | 20 |  * generic algorithms to work on it.
 | 
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 | 21 |  *
 | 
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 | 22 |  * \note forward declarations are not enough as we need the true (but empty)
 | 
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 | 23 |  * instance when going throughb the list with boost::mpl::for_each.
 | 
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 | 24 |  */
 | 
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 | 25 | namespace VMGDataFused {
 | 
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 | 26 |   // keys for sampled_potential
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 | 27 |   struct sampled_potential {};
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| [c5feef] | 28 |   struct energy_potential {};
 | 
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| [e2925fd] | 29 |   struct nuclei_long {};
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 | 30 |   struct electron_long {};
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| [a2295a] | 31 | 
 | 
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 | 32 |   // keys for longrange
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 | 33 | 
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| [67fec1] | 34 |   struct electron_longrange {};
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 | 35 |   struct electron_shortrange {};
 | 
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 | 36 |   struct nuclei_longrange {};
 | 
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 | 37 |   struct nuclei_shortrange {};
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| [e2925fd] | 38 |   struct mixed_longrange {};
 | 
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 | 39 |   struct mixed_shortrange {};
 | 
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| [67fec1] | 40 |   struct total_longrange {};
 | 
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 | 41 |   struct total_shortrange {};
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| [358ddb] | 42 | }
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 | 43 | 
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 | 44 | 
 | 
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 | 45 | 
 | 
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 | 46 | #endif /* VMGDATAFUSED_HPP_ */
 | 
|---|
       
      
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