Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
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        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
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        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
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        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
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        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
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        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
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        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
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        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
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        PdbParser_setsAtomName
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          | 
            Last change
 on this file since a0fa14 was             94db13, checked in by Frederik Heber <heber@…>, 10 years ago           | 
        
        
          | 
             
Again changes to obtain correct longrange forces, also forces are optional. 
 
- renamed particle_forces -> forces to make it consistent with MPQCData_Fused.
 - MPQCData_Fused and VMGData_Fused are structs and no longer namespace as the
latter cannot serve as template arguments.
 - split off forces in VMGData into VMGDataForceMap_t and VMGDataForceVector_t.
 - changed ConvertMPQCDataToForceMap() into template function
ConvertDataToForceMap(), working also on VMGDataForceMap_t.
 - this required changes in FragmentationShortRangeResults.
 - FragmentationLongRangeResults now also converts the longrange forces
correctly.
 - AnalyseFragmentResults now prints also a ..VMGForces.dat file.
 - VMGData's forces are now optional to some degree and analysis chain can deal
with it.
 - introducing forces we must still maintain working code when results without
forces are calculated (e.g. as in the regression tests). Hence, a boolean
im VMGData and FragmentationLongRangeResults states whether forces have been
found or not and whether these should be summed up or not subsequently.
  
           | 
        
        
          
            
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          | 
            File size:
            1.7 KB
           | 
        
      
      
| Rev | Line |   | 
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| [2bc560] | 1 | /*
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 | 2 |  * VMGData.hpp
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 | 3 |  *
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 | 4 |  *  Created on: Aug 6, 2012
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 | 5 |  *      Author: heber
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 | 6 |  */
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 | 7 | 
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 | 8 | #ifndef VMGDATA_HPP_
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 | 9 | #define VMGDATA_HPP_
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 | 10 | 
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 | 11 | 
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 | 12 | // include config.h
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 | 13 | #ifdef HAVE_CONFIG_H
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 | 14 | #include <config.h>
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 | 15 | #endif
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 | 16 | 
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 | 17 | 
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 | 18 | #include <boost/serialization/access.hpp>
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 | 19 | #include <boost/serialization/vector.hpp>
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 | 20 | 
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 | 21 | #include <iosfwd>
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 | 22 | #include <vector>
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 | 23 | 
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| [d200ae] | 24 | #include "Fragmentation/Summation/SetValues/FragmentForces.hpp"
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| [fbf143] | 25 | #include "Fragmentation/Summation/SetValues/SamplingGrid.hpp"
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| [2bc560] | 26 | 
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 | 27 | /** This struct contains all returned data from an VMGJob
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 | 28 |  *
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 | 29 |  */
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 | 30 | struct VMGData
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 | 31 | {
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 | 32 |   /** Constructor for class VMGData.
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 | 33 |    *
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 | 34 |    * \param _props properties of sampled potential
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 | 35 |    */
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 | 36 |   VMGData(const SamplingGridProperties &_props);
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 | 37 | 
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 | 38 |   /** Default constructor for class VMGData.
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 | 39 |    *
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 | 40 |    */
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 | 41 |   VMGData();
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 | 42 | 
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 | 43 |   //!> sampled potential on the grid as output
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 | 44 |   SamplingGrid sampled_potential;
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| [e355b31] | 45 |   //!> sampled potential on the grid as output
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 | 46 |   SamplingGrid both_sampled_potential;
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| [e2925fd] | 47 |   //!> nuclei long-range contribution to energy
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 | 48 |   double nuclei_long;
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 | 49 |   //!> electron long-range contribution to energy
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 | 50 |   double electron_long;
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| [d200ae] | 51 |   //!> force vectors of all nuclei
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| [94db13] | 52 |   FragmentForces forces;
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 | 53 | 
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 | 54 |   //!> internal value to check when we should sum forces and when not
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 | 55 |   bool hasForces;
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| [2bc560] | 56 | 
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 | 57 | private:
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 | 58 |   friend class boost::serialization::access;
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 | 59 |   // serialization
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 | 60 |   template <typename Archive>
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 | 61 |   void serialize(Archive& ar, const unsigned int version)
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 | 62 |   {
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 | 63 |     ar & sampled_potential;
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| [e355b31] | 64 |     if (version > 1)
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 | 65 |       ar & both_sampled_potential;
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| [e2925fd] | 66 |     if (version > 0)
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 | 67 |       ar & nuclei_long;
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 | 68 |     ar & electron_long;
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| [94db13] | 69 |     if (version > 2) {
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 | 70 |       ar & forces;
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 | 71 |       hasForces = true;
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 | 72 |     } else
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 | 73 |       hasForces = false;
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| [2bc560] | 74 |   }
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 | 75 | };
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 | 76 | 
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| [d200ae] | 77 | BOOST_CLASS_VERSION(VMGData, 3)
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| [e2925fd] | 78 | 
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| [2bc560] | 79 | std::ostream & operator<<(std::ostream &ost, const VMGData &data);
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 | 80 | 
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 | 81 | 
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 | 82 | #endif /* VMGDATA_HPP_ */
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