source: src/Fragmentation/KeySet.cpp@ 6ef48c

Last change on this file since 6ef48c was 94d5ac6, checked in by Frederik Heber <heber@…>, 12 years ago

FIX: As we use GSL internally, we are as of now required to use GPL v2 license.

  • GNU Scientific Library is used at every place in the code, especially the sub-package LinearAlgebra is based on it which in turn is used really everywhere in the remainder of MoleCuilder. Hence, we have to use the GPL license for the whole of MoleCuilder. In effect, GPL's COPYING was present all along and stated the terms of the GPL v2 license.
  • Hence, I added the default GPL v2 disclaimer to every source file and removed the note about a (actually missing) LICENSE file.
  • also, I added a help-redistribute action which again gives the disclaimer of the GPL v2.
  • also, I changed in the disclaimer that is printed at every program start in builder_init.cpp.
  • TEST: Added check on GPL statement present in every module to test CodeChecks project-disclaimer.
  • Property mode set to 100644
File size: 2.9 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * KeySet.cpp
25 *
26 * Created on: Oct 20, 2011
27 * Author: heber
28 */
29
30#ifdef HAVE_CONFIG_H
31#include <config.h>
32#endif
33
34#include "CodePatterns/MemDebug.hpp"
35
36#include <sstream>
37
38#include "CodePatterns/Log.hpp"
39
40#include "KeySet.hpp"
41
42/** Constructor of class KeySet.
43 *
44 * This class contains a set of indices for the atoms contained in a fragment.
45 *
46 */
47KeySet::KeySet()
48{}
49
50/** Destructor of class KeySet.
51 *
52 */
53KeySet::~KeySet()
54{}
55
56
57/** Comparator to allow for placing in a map.
58 *
59 * @param a instance to compare to
60 * @return true - this instance has less items or the first different item itself is less,
61 * false - else
62 */
63bool KeySet::operator<(const KeySet &a) const
64{
65 //LOG(0, "my check is used.");
66 if (size() < a.size()) {
67 return true;
68 } else {
69 if (size() > a.size()) {
70 return false;
71 } else {
72 KeySet::iterator IteratorA = begin();
73 KeySet::iterator IteratorB = a.begin();
74 while ((IteratorA != end()) && (IteratorB != a.end())) {
75 if ((*IteratorA) < (*IteratorB))
76 return true;
77 else if ((*IteratorA) > (*IteratorB)) {
78 return false;
79 } // else, go on to next index
80 IteratorA++;
81 IteratorB++;
82 } // end of while loop
83 }// end of check in case of equal sizes
84 }
85 return false; // if we reach this point, they are equal
86}
87
88/** Scans a single line for number and puts them into \a KeySet.
89 * \param *buffer buffer to scan
90 * \return true - at least one valid atom id parsed, false - CurrentSet is empty
91 */
92bool KeySet::ScanBufferIntoKeySet(char *buffer)
93{
94 std::stringstream line;
95 int AtomNr;
96 int status = 0;
97
98 line.str(buffer);
99 while (!line.eof()) {
100 line >> AtomNr;
101 if (AtomNr >= 0) {
102 insert(AtomNr); // insert at end, hence in same order as in file!
103 status++;
104 } // else it's "-1" or else and thus must not be added
105 }
106 std::stringstream output;
107 for(KeySet::iterator runner = begin(); runner != end(); runner++)
108 output << (runner == begin() ? "" : " " ) << (*runner);
109 LOG(2, "INFO: The scanned KeySet is " << output.str());
110 return (status != 0);
111}
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