Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
      
| Rev | Line |   | 
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| [d45ed9] | 1 | /*
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 | 2 |  * AtomFragmentsMap.hpp
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 | 3 |  *
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 | 4 |  *  Created on: Mar 7, 2016
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 | 5 |  *      Author: heber
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 | 6 |  */
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 | 7 | 
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 | 8 | 
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 | 9 | #ifndef ATOMFRAGMENTSMAP_HPP_
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 | 10 | #define ATOMFRAGMENTSMAP_HPP_
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 | 11 | 
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 | 12 | // include config.h
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 | 13 | #ifdef HAVE_CONFIG_H
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 | 14 | #include <config.h>
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 | 15 | #endif
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 | 16 | 
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| [d713ce] | 17 | #include "CodePatterns/Singleton.hpp"
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 | 18 | 
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| [d45ed9] | 19 | #include <list>
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 | 20 | #include <map>
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 | 21 | 
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| [bd6e5c] | 22 | #include "types.hpp"
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 | 23 | 
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| [d45ed9] | 24 | class KeySet;
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 | 25 | class Graph;
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 | 26 | 
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 | 27 | /** This class creates in instantiation a map connecting each atom with
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 | 28 |  * the (known) fragments it takes part in.
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 | 29 |  *
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| [d713ce] | 30 |  * In the HomologyGraph and its -Container we do not have this information
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 | 31 |  * any longer. However, we need this in order to make statements about atomic
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 | 32 |  * properties from calculated fragment properties.
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 | 33 |  *
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| [d45ed9] | 34 |  */
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| [d713ce] | 35 | class AtomFragmentsMap : public Singleton<AtomFragmentsMap>
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| [d45ed9] | 36 | {
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 | 37 | public:
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| [d713ce] | 38 |   //** Function to insert new fragments into storage container.
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 | 39 |   void insert(
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| [d45ed9] | 40 |       const Graph &_graph,
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 | 41 |       size_t _MaxOrder);
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 | 42 | 
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| [d713ce] | 43 |   /** Function to clear the container.
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 | 44 |    *
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 | 45 |    */
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 | 46 |   void clear()
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 | 47 |   { atommap.clear(); }
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 | 48 | 
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| [bd6e5c] | 49 |   typedef std::list<KeySet> keysets_t;
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| [d45ed9] | 50 |   //!> typedef for the internal map
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| [bd6e5c] | 51 |   typedef std::map<atomId_t, keysets_t> AtomFragmentsMap_t;
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| [d45ed9] | 52 | 
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 | 53 |   const AtomFragmentsMap_t& getMap() const
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 | 54 |   { return atommap; }
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 | 55 | 
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| [d713ce] | 56 | private:
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 | 57 |   //!> grant singleton pattern access to private cstor/dstor
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 | 58 |   friend class Singleton<AtomFragmentsMap>;
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 | 59 | 
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 | 60 |   /** Private default cstor.
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 | 61 |    *
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 | 62 |    */
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 | 63 |   AtomFragmentsMap() {}
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 | 64 | 
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 | 65 |   /** Private default dstor.
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 | 66 |    *
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 | 67 |    */
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 | 68 |   ~AtomFragmentsMap() {}
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 | 69 | 
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| [d45ed9] | 70 | private:
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 | 71 |   //!> internal map filled on instantiation
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 | 72 |   AtomFragmentsMap_t atommap;
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 | 73 | };
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 | 74 | 
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 | 75 | 
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 | 76 | #endif /* ATOMFRAGMENTSMAP_HPP_ */
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