1 | /*
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2 | * SphericalPointDistribution.hpp
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3 | *
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4 | * Created on: May 29, 2014
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5 | * Author: heber
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6 | */
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7 |
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8 |
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9 | #ifndef SPHERICALPOINTDISTRIBUTION_HPP_
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10 | #define SPHERICALPOINTDISTRIBUTION_HPP_
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11 |
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12 | // include config.h
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13 | #ifdef HAVE_CONFIG_H
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14 | #include <config.h>
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15 | #endif
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16 |
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17 | #include "CodePatterns/Assert.hpp"
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18 | #include "CodePatterns/IteratorAdaptors.hpp"
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19 | #include "CodePatterns/toString.hpp"
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20 |
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21 | #include <algorithm>
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22 | #include <cmath>
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23 | #include <limits>
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24 | #include <list>
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25 | #include <vector>
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26 | #include <map>
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27 |
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28 | #include "LinearAlgebra/Line.hpp"
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29 | #include "LinearAlgebra/RealSpaceMatrix.hpp"
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30 | #include "LinearAlgebra/Vector.hpp"
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31 |
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32 | /** contains getters for the VSEPR model for specific number of electrons.
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33 | *
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34 | * This struct contains specialized functions returning a list of Vectors
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35 | * (points in space) to match the VSEPR model for the given number of electrons.
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36 | *
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37 | * This is implemented via template specialization of the function get().
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38 | *
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39 | * These specializations are taken from the python script \b CreateVspeShapes.py
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40 | * by Christian Neuen, 07th May 2009.
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41 | */
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42 | struct SphericalPointDistribution
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43 | {
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44 | /** Cstor for SphericalPointDistribution, allows setting radius of sphere
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45 | *
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46 | * \param _BondLength desired radius of sphere
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47 | */
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48 | SphericalPointDistribution(const double _Bondlength = 1.) :
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49 | Bondlength(_Bondlength),
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50 | SQRT_3(sqrt(3.0))
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51 | {}
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52 |
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53 | //!> typedef for the list of points
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54 | typedef std::list<Vector> Polygon_t;
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55 |
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56 | /** General getter function for the distribution of points on the surface.
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57 | *
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58 | * \warn this function needs to be specialized!
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59 | *
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60 | * \return Polygon_t with points on the surface centered at (0,0,0)
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61 | */
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62 | template <int N> Polygon_t get()
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63 | {
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64 | ASSERT(0, "SphericalPointDistribution::get() - not specialized for "+toString(N)+".");
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65 | }
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66 |
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67 | /** Matches a given spherical distribution with another containing more
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68 | * points.
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69 | *
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70 | * The idea is to produce a matching from all points in \a _polygon to those
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71 | * in \a _newpolygon in such a way that their distance difference is minimal.
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72 | * As we just look at numbers of points determined by valency, i.e.
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73 | * independent of the number of atoms, we simply go through each of the possible
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74 | * mappings. We stop when the L1 error is below a certain \a threshold,
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75 | * otherwise we pick the matching with the lowest L2 error.
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76 | *
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77 | * This is a helper to determine points where to best insert saturation
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78 | * hydrogens.
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79 | *
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80 | * \param _polygon current occupied positions
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81 | * \param _newpolygon ideal distribution to match best with current occupied
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82 | * positions
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83 | * \return remaining vacant positions relative to \a _polygon
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84 | */
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85 | static Polygon_t matchSphericalPointDistributions(
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86 | const Polygon_t &_polygon,
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87 | const Polygon_t &_newpolygon
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88 | );
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89 |
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90 |
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91 | //!> default radius of the spherical distribution
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92 | const double Bondlength;
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93 | //!> precalculated value for root of 3
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94 | const double SQRT_3;
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95 | };
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96 |
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97 | typedef std::list<unsigned int> IndexList_t;
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98 | typedef std::vector<unsigned int> IndexArray_t;
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99 | typedef std::vector<Vector> VectorArray_t;
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100 | typedef std::vector<double> DistanceArray_t;
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101 |
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102 | DistanceArray_t calculatePairwiseDistances(
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103 | const std::vector<Vector> &_points,
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104 | const IndexList_t &_indices
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105 | )
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106 | {
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107 | DistanceArray_t result;
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108 | for (IndexList_t::const_iterator firstiter = _indices.begin();
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109 | firstiter != _indices.end(); ++firstiter) {
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110 | for (IndexList_t::const_iterator seconditer = firstiter;
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111 | seconditer != _indices.end(); ++seconditer) {
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112 | if (firstiter == seconditer)
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113 | continue;
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114 | const double distance = (_points[*firstiter] - _points[*seconditer]).NormSquared();
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115 | result.push_back(distance);
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116 | }
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117 | }
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118 | return result;
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119 | }
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120 |
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121 | // class generator: taken from www.cplusplus.com example std::generate
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122 | struct c_unique {
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123 | int current;
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124 | c_unique() {current=0;}
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125 | int operator()() {return ++current;}
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126 | } UniqueNumber;
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127 |
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128 | /** Returns squared L2 error of the given \a _Matching.
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129 | *
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130 | * We compare the pair-wise distances of each associated matching
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131 | * and check whether these distances each match between \a _old and
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132 | * \a _new.
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133 | *
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134 | * \param _old first set of points (fewer or equal to \a _new)
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135 | * \param _new second set of points
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136 | * \param _Matching matching between the two sets
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137 | * \return pair with L1 and squared L2 error
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138 | */
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139 | std::pair<double, double> calculateErrorOfMatching(
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140 | const std::vector<Vector> &_old,
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141 | const std::vector<Vector> &_new,
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142 | const IndexList_t &_Matching)
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143 | {
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144 | std::pair<double, double> errors( std::make_pair( 0., 0. ) );
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145 |
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146 | if (_Matching.size() > 1) {
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147 | // convert matching into two vectors to calculate distance among another
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148 |
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149 | // calculate all pair-wise distances
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150 | IndexList_t keys(_Matching.size());
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151 | std::generate (keys.begin(), keys.end(), UniqueNumber);
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152 | const DistanceArray_t firstdistances = calculatePairwiseDistances(_old, keys);
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153 | const DistanceArray_t seconddistances = calculatePairwiseDistances(_new, _Matching);
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154 |
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155 | ASSERT( firstdistances.size() == keys.size()*(keys.size()+1)/2,
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156 | "calculateL2ErrorOfMatching() - unexpected pair-wise distance array size.");
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157 | ASSERT( firstdistances.size() == seconddistances.size(),
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158 | "calculateL2ErrorOfMatching() - mismatch in pair-wise distance array sizes.");
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159 | DistanceArray_t::const_iterator firstiter = firstdistances.begin();
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160 | DistanceArray_t::const_iterator seconditer = seconddistances.begin();
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161 | for (;(firstiter != firstdistances.end()) && (seconditer != seconddistances.end());
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162 | ++firstiter, ++seconditer) {
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163 | const double gap = *firstiter - *seconditer;
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164 | // L1 error
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165 | if (errors.first < gap)
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166 | errors.first = gap;
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167 | // L2 error
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168 | errors.second += gap*gap;
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169 | }
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170 | }
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171 |
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172 | return errors;
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173 | }
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174 |
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175 | SphericalPointDistribution::Polygon_t removeMatchingPoints(
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176 | const SphericalPointDistribution::Polygon_t &_points,
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177 | const IndexList_t &_matchingindices
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178 | )
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179 | {
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180 | SphericalPointDistribution::Polygon_t remainingpoints;
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181 | IndexArray_t indices(_matchingindices.begin(), _matchingindices.end());
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182 | std::sort(indices.begin(), indices.end());
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183 | IndexArray_t::const_iterator valueiter = indices.begin();
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184 | SphericalPointDistribution::Polygon_t::const_iterator pointiter =
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185 | _points.begin();
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186 | for (unsigned int i=0; i< _points.size(); ++i, ++pointiter) {
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187 | // skip all those in values
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188 | if (*valueiter == i)
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189 | ++valueiter;
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190 | else
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191 | remainingpoints.push_back(*pointiter);
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192 | }
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193 |
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194 | return remainingpoints;
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195 | }
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196 |
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197 | /** Rotates a given polygon around x, y, and z axis by the given angles.
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198 | *
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199 | * Essentially, we concentrate on the three points of the polygon to rotate
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200 | * to the correct position. First, we rotate its center via \a angles,
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201 | * then we rotate the "triangle" around itself/\a _RotationAxis by
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202 | * \a _RotationAngle.
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203 | *
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204 | * \param _polygon polygon whose points to rotate
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205 | * \param _angles vector with rotation angles for x,y,z axis
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206 | * \param _RotationAxis
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207 | * \param _RotationAngle
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208 | */
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209 | SphericalPointDistribution::Polygon_t rotatePolygon(
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210 | const SphericalPointDistribution::Polygon_t &_polygon,
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211 | const std::vector<double> &_angles,
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212 | const Line &_RotationAxis,
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213 | const double _RotationAngle)
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214 | {
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215 | SphericalPointDistribution::Polygon_t rotated_polygon = _polygon;
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216 | RealSpaceMatrix rotation;
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217 | ASSERT( _angles.size() == 3,
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218 | "rotatePolygon() - not exactly "+toString(3)+" angles given.");
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219 | rotation.setRotation(_angles[0] * M_PI/180., _angles[1] * M_PI/180., _angles[2] * M_PI/180.);
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220 |
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221 | // apply rotation angles
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222 | for (SphericalPointDistribution::Polygon_t::iterator iter = rotated_polygon.begin();
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223 | iter != rotated_polygon.end(); ++iter) {
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224 | *iter = rotation * (*iter);
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225 | _RotationAxis.rotateVector(*iter, _RotationAngle);
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226 | }
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227 |
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228 | return rotated_polygon;
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229 | }
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230 |
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231 | struct MatchingControlStructure {
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232 | bool foundflag;
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233 | double bestL2;
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234 | IndexList_t bestmatching;
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235 | VectorArray_t oldpoints;
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236 | VectorArray_t newpoints;
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237 | };
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238 |
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239 | /** Recursive function to go through all possible matchings.
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240 | *
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241 | * \param _MCS structure holding global information to the recursion
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242 | * \param _matching current matching being build up
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243 | * \param _indices contains still available indices
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244 | * \param _matchingsize
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245 | */
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246 | void recurseMatchings(
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247 | MatchingControlStructure &_MCS,
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248 | IndexList_t &_matching,
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249 | IndexList_t _indices,
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250 | unsigned int _matchingsize)
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251 | {
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252 | //!> threshold for L1 error below which matching is immediately acceptable
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253 | const double L1THRESHOLD = 1e-2;
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254 | if (!_MCS.foundflag) {
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255 | if (_matching.size() < _matchingsize) {
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256 | // go through all indices
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257 | for (IndexList_t::iterator iter = _indices.begin();
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258 | iter != _indices.end();) {
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259 | // add index to matching
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260 | _matching.push_back(*iter);
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261 | // remove index but keep iterator to position (is the next to erase element)
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262 | IndexList_t::iterator backupiter = _indices.erase(iter);
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263 | // recurse with decreased _matchingsize
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264 | recurseMatchings(_MCS, _matching, _indices, _matchingsize-1);
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265 | // re-add chosen index and reset index to new position
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266 | _indices.insert(backupiter, _matching.back());
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267 | iter = backupiter;
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268 | // remove index from _matching to make space for the next one
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269 | _matching.pop_back();
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270 | }
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271 | // gone through all indices then exit recursion
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272 | _MCS.foundflag = true;
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273 | } else {
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274 | // calculate errors
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275 | std::pair<double, double> errors = calculateErrorOfMatching(
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276 | _MCS.oldpoints, _MCS.newpoints, _matching);
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277 | if (errors.first < L1THRESHOLD) {
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278 | _MCS.bestmatching = _matching;
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279 | _MCS.foundflag = true;
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280 | }
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281 | if (_MCS.bestL2 > errors.second) {
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282 | _MCS.bestmatching = _matching;
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283 | _MCS.bestL2 = errors.second;
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284 | }
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285 | }
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286 | }
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287 | }
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288 |
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289 | SphericalPointDistribution::Polygon_t
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290 | SphericalPointDistribution::matchSphericalPointDistributions(
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291 | const SphericalPointDistribution::Polygon_t &_polygon,
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292 | const SphericalPointDistribution::Polygon_t &_newpolygon
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293 | )
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294 | {
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295 | SphericalPointDistribution::Polygon_t remainingpoints;
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296 | VectorArray_t remainingold(_polygon.begin(), _polygon.end());
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297 | VectorArray_t remainingnew(_newpolygon.begin(), _newpolygon.end());
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298 |
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299 | if (_polygon.size() > 0) {
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300 | MatchingControlStructure MCS;
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301 | MCS.foundflag = false;
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302 | MCS.bestL2 = std::numeric_limits<double>::max();
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303 | MCS.oldpoints.insert(MCS.oldpoints.begin(), _polygon.begin(),_polygon.end() );
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304 | MCS.newpoints.insert(MCS.newpoints.begin(), _newpolygon.begin(),_newpolygon.end() );
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305 |
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306 | // search for bestmatching combinatorially
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307 | {
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308 | // translate polygon into vector to enable index addressing
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309 | IndexList_t indices(_newpolygon.size());
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310 | std::generate(indices.begin(), indices.end(), UniqueNumber);
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311 | IndexList_t matching;
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312 |
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313 | // walk through all matchings
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314 | const unsigned int matchingsize = _polygon.size();
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315 | ASSERT( matchingsize <= indices.size(),
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316 | "SphericalPointDistribution::matchSphericalPointDistributions() - not enough new points to choose for matching to old ones.");
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317 | recurseMatchings(MCS, matching, indices, matchingsize);
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318 | }
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319 |
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320 | // determine rotation angles to align the two point distributions with
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321 | // respect to bestmatching
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322 | std::vector<double> angles(3);
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323 | Vector newCenter;
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324 | {
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325 | // calculate center of triangle/line/point consisting of first points of matching
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326 | Vector oldCenter;
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327 | IndexList_t::const_iterator iter = MCS.bestmatching.begin();
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328 | unsigned int i = 0;
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329 | for (; (i<3) && (i<MCS.bestmatching.size()); ++i, ++iter) {
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330 | oldCenter += remainingold[i];
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331 | newCenter += remainingnew[*iter];
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332 | }
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333 | oldCenter *= 1./(double)i;
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334 | newCenter *= 1./(double)i;
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335 |
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336 | Vector direction(0.,0.,0.);
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337 | for(size_t i=0;i<NDIM;++i) {
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338 | // create new rotation axis
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339 | direction[i] = 1.;
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340 | const Line axis (zeroVec, direction);
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341 | // calculate rotation angle for this axis
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342 | const double alpha = direction.Angle(oldCenter) - direction.Angle(newCenter);
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343 | // perform rotation
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344 | axis.rotateVector(newCenter, alpha);
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345 | // store angle
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346 | angles[i] = alpha;
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347 | // reset direction component for next iteration
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348 | direction[i] = 0.;
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349 | }
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350 | }
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351 | const Line RotationAxis(zeroVec, newCenter);
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352 | const double RotationAngle =
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353 | newCenter.Angle(remainingold[0])
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354 | - newCenter.Angle(remainingnew[*MCS.bestmatching.begin()]);
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355 |
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356 | // rotate _newpolygon
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357 | SphericalPointDistribution::Polygon_t rotated_newpolygon =
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358 | rotatePolygon(_newpolygon, angles, RotationAxis, RotationAngle);
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359 |
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360 | // remove all points in matching and return remaining ones
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361 | return removeMatchingPoints(rotated_newpolygon, MCS.bestmatching);
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362 | } else
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363 | return _newpolygon;
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364 | }
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365 |
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366 | template <>
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367 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<2>()
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368 | {
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369 | Polygon_t polygon;
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370 | polygon.push_back( Vector(Bondlength,0.,0.));
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371 | polygon.push_back( Vector(-Bondlength,0.,0.));
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372 | ASSERT( polygon.size() == 2,
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373 | "SphericalPointDistribution::get<2>() - polygon has wrong size.");
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374 | return polygon;
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375 | }
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376 |
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377 | template <>
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378 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<3>()
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379 | {
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380 | Polygon_t polygon;
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381 | polygon.push_back( Vector(Bondlength,0.,0.));
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382 | polygon.push_back( Vector(-Bondlength*0.5, SQRT_3*0.5,0.));
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383 | polygon.push_back( Vector(-Bondlength*0.5, -SQRT_3*0.5,0.));
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384 | ASSERT( polygon.size() == 3,
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385 | "SphericalPointDistribution::get<3>() - polygon has wrong size.");
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386 | return polygon;
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387 | }
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388 |
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389 | template <>
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390 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<4>()
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391 | {
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392 | Polygon_t polygon;
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393 | polygon.push_back( Vector(Bondlength,0.,0.));
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394 | polygon.push_back( Vector(-Bondlength/3.0, Bondlength*2.0*M_SQRT2/3.0,0.));
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395 | polygon.push_back( Vector(-Bondlength/3.0, -Bondlength*M_SQRT2/3.0, Bondlength*M_SQRT2/SQRT_3));
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396 | polygon.push_back( Vector(-Bondlength/3.0, -Bondlength*M_SQRT2/3.0, -Bondlength*M_SQRT2/SQRT_3));
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397 | ASSERT( polygon.size() == 4,
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398 | "SphericalPointDistribution::get<4>() - polygon has wrong size.");
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399 | return polygon;
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400 | }
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401 |
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402 | template <>
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403 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<5>()
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404 | {
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405 | Polygon_t polygon;
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406 | polygon.push_back( Vector(Bondlength,0.,0.));
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407 | polygon.push_back( Vector(-Bondlength, 0.0, 0.0));
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408 | polygon.push_back( Vector(0.0, Bondlength, 0.0));
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409 | polygon.push_back( Vector(0.0, -Bondlength*0.5, Bondlength*SQRT_3*0.5));
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410 | polygon.push_back( Vector(0.0, -Bondlength*0.5, -Bondlength*SQRT_3*0.5));
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411 | ASSERT( polygon.size() == 5,
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412 | "SphericalPointDistribution::get<5>() - polygon has wrong size.");
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413 | return polygon;
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414 | }
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415 |
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416 | template <>
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417 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<6>()
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418 | {
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419 | Polygon_t polygon;
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420 | polygon.push_back( Vector(Bondlength,0.,0.));
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421 | polygon.push_back( Vector(-Bondlength, 0.0, 0.0));
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422 | polygon.push_back( Vector(0.0, Bondlength, 0.0));
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423 | polygon.push_back( Vector(0.0, -Bondlength, 0.0));
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424 | polygon.push_back( Vector(0.0, 0.0, Bondlength));
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425 | polygon.push_back( Vector(0.0, 0.0, -Bondlength));
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426 | ASSERT( polygon.size() == 6,
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427 | "SphericalPointDistribution::get<6>() - polygon has wrong size.");
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428 | return polygon;
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429 | }
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430 |
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431 | template <>
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432 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<7>()
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433 | {
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434 | Polygon_t polygon;
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435 | polygon.push_back( Vector(Bondlength,0.,0.));
|
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436 | polygon.push_back( Vector(-Bondlength, 0.0, 0.0));
|
---|
437 | polygon.push_back( Vector(0.0, Bondlength, 0.0));
|
---|
438 | polygon.push_back( Vector(0.0, Bondlength*cos(M_PI*0.4), Bondlength*sin(M_PI*0.4)));
|
---|
439 | polygon.push_back( Vector(0.0, Bondlength*cos(M_PI*0.8), Bondlength*sin(M_PI*0.8)));
|
---|
440 | polygon.push_back( Vector(0.0, Bondlength*cos(M_PI*1.2), Bondlength*sin(M_PI*1.2)));
|
---|
441 | polygon.push_back( Vector(0.0, Bondlength*cos(M_PI*1.6), Bondlength*sin(M_PI*1.6)));
|
---|
442 | ASSERT( polygon.size() == 7,
|
---|
443 | "SphericalPointDistribution::get<7>() - polygon has wrong size.");
|
---|
444 | return polygon;
|
---|
445 | }
|
---|
446 |
|
---|
447 | template <>
|
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448 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<8>()
|
---|
449 | {
|
---|
450 | Polygon_t polygon;
|
---|
451 | polygon.push_back( Vector(Bondlength,0.,0.));
|
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452 | polygon.push_back( Vector(-Bondlength, 0.0, 0.0));
|
---|
453 | polygon.push_back( Vector(-Bondlength/3.0, Bondlength*2.0*M_SQRT2/3.0, 0.0));
|
---|
454 | polygon.push_back( Vector(-Bondlength/3.0, -Bondlength*M_SQRT2/3.0, Bondlength*M_SQRT2/SQRT_3));
|
---|
455 | polygon.push_back( Vector(-Bondlength/3.0, -Bondlength*M_SQRT2/3.0, -Bondlength*M_SQRT2/SQRT_3));
|
---|
456 | polygon.push_back( Vector(Bondlength/3.0, -Bondlength*2.0*M_SQRT2/3.0, 0.0));
|
---|
457 | polygon.push_back( Vector(Bondlength/3.0, Bondlength*M_SQRT2/3.0, -Bondlength*M_SQRT2/SQRT_3));
|
---|
458 | polygon.push_back( Vector(Bondlength/3.0, Bondlength*M_SQRT2/3.0, Bondlength*M_SQRT2/SQRT_3));
|
---|
459 | ASSERT( polygon.size() == 8,
|
---|
460 | "SphericalPointDistribution::get<8>() - polygon has wrong size.");
|
---|
461 | return polygon;
|
---|
462 | }
|
---|
463 |
|
---|
464 | template <>
|
---|
465 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<9>()
|
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466 | {
|
---|
467 | Polygon_t polygon;
|
---|
468 | polygon.push_back( Vector(Bondlength,0.,0.));
|
---|
469 | polygon.push_back( Vector(Bondlength*cos(0.4*M_PI), Bondlength*sin(0.4*M_PI), 0.0));
|
---|
470 | polygon.push_back( Vector(Bondlength*cos(0.4*M_PI), -Bondlength*sin(0.4*M_PI), 0.0));
|
---|
471 | polygon.push_back( Vector(Bondlength*cos(0.4*M_PI), 0.0, Bondlength*sin(0.4*M_PI)));
|
---|
472 | polygon.push_back( Vector(Bondlength*cos(0.4*M_PI), 0.0, -Bondlength*sin(0.4*M_PI)));
|
---|
473 | polygon.push_back( Vector(Bondlength*cos(0.8*M_PI), Bondlength*sin(0.8*M_PI)*sin(0.25*M_PI), Bondlength*sin(0.8*M_PI)*cos(0.25*M_PI)));
|
---|
474 | polygon.push_back( Vector(Bondlength*cos(0.8*M_PI), Bondlength*sin(0.8*M_PI)*sin(0.75*M_PI), Bondlength*sin(0.8*M_PI)*cos(0.75*M_PI)));
|
---|
475 | polygon.push_back( Vector(Bondlength*cos(0.8*M_PI), Bondlength*sin(0.8*M_PI)*sin(1.25*M_PI), Bondlength*sin(0.8*M_PI)*cos(1.25*M_PI)));
|
---|
476 | polygon.push_back( Vector(Bondlength*cos(0.8*M_PI), Bondlength*sin(0.8*M_PI)*sin(1.75*M_PI), Bondlength*sin(0.8*M_PI)*cos(1.75*M_PI)));
|
---|
477 | ASSERT( polygon.size() == 9,
|
---|
478 | "SphericalPointDistribution::get<9>() - polygon has wrong size.");
|
---|
479 | return polygon;
|
---|
480 | }
|
---|
481 |
|
---|
482 | template <>
|
---|
483 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<10>()
|
---|
484 | {
|
---|
485 | Polygon_t polygon;
|
---|
486 | polygon.push_back( Vector(Bondlength,0.,0.));
|
---|
487 | polygon.push_back( Vector(-Bondlength, 0.0, 0.0));
|
---|
488 | const double temp_Bondlength = Bondlength*0.5*SQRT_3;
|
---|
489 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength, 0.0));
|
---|
490 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, -temp_Bondlength, 0.0));
|
---|
491 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, 0.0, temp_Bondlength));
|
---|
492 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, 0.0, -temp_Bondlength));
|
---|
493 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*sin(0.25*M_PI), temp_Bondlength*cos(0.25*M_PI)));
|
---|
494 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*sin(0.75*M_PI), temp_Bondlength*cos(0.75*M_PI)));
|
---|
495 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*sin(1.25*M_PI), temp_Bondlength*cos(1.25*M_PI)));
|
---|
496 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*sin(1.75*M_PI), temp_Bondlength*cos(1.75*M_PI)));
|
---|
497 | ASSERT( polygon.size() == 10,
|
---|
498 | "SphericalPointDistribution::get<10>() - polygon has wrong size.");
|
---|
499 | return polygon;
|
---|
500 | }
|
---|
501 |
|
---|
502 | template <>
|
---|
503 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<11>()
|
---|
504 | {
|
---|
505 | Polygon_t polygon;
|
---|
506 | polygon.push_back( Vector(Bondlength,0.,0.));
|
---|
507 | {
|
---|
508 | const double temp_Bondlength = Bondlength*sin(0.4*M_PI);
|
---|
509 | polygon.push_back( Vector(Bondlength*cos(0.4*M_PI), temp_Bondlength, 0.0));
|
---|
510 | polygon.push_back( Vector(Bondlength*cos(0.4*M_PI), temp_Bondlength*cos(0.4*M_PI), temp_Bondlength*sin(0.4*M_PI)));
|
---|
511 | polygon.push_back( Vector(Bondlength*cos(0.4*M_PI), temp_Bondlength*cos(0.8*M_PI), temp_Bondlength*sin(0.8*M_PI)));
|
---|
512 | polygon.push_back( Vector(Bondlength*cos(0.4*M_PI), temp_Bondlength*cos(1.2*M_PI), temp_Bondlength*sin(1.2*M_PI)));
|
---|
513 | polygon.push_back( Vector(Bondlength*cos(0.4*M_PI), temp_Bondlength*cos(1.6*M_PI), temp_Bondlength*sin(1.6*M_PI)));
|
---|
514 | }
|
---|
515 | {
|
---|
516 | const double temp_Bondlength = Bondlength*sin(0.8*M_PI);
|
---|
517 | polygon.push_back( Vector(Bondlength*cos(0.8*M_PI), temp_Bondlength*cos(0.2*M_PI), temp_Bondlength*sin(0.2*M_PI)));
|
---|
518 | polygon.push_back( Vector(Bondlength*cos(0.8*M_PI), temp_Bondlength*cos(0.6*M_PI), temp_Bondlength*sin(0.6*M_PI)));
|
---|
519 | polygon.push_back( Vector(Bondlength*cos(0.8*M_PI), temp_Bondlength*cos(1.0*M_PI), temp_Bondlength*sin(1.0*M_PI)));
|
---|
520 | polygon.push_back( Vector(Bondlength*cos(0.8*M_PI), temp_Bondlength*cos(1.4*M_PI), temp_Bondlength*sin(1.4*M_PI)));
|
---|
521 | polygon.push_back( Vector(Bondlength*cos(0.8*M_PI), temp_Bondlength*cos(1.8*M_PI), temp_Bondlength*sin(1.8*M_PI)));
|
---|
522 | }
|
---|
523 | ASSERT( polygon.size() == 11,
|
---|
524 | "SphericalPointDistribution::get<11>() - polygon has wrong size.");
|
---|
525 | return polygon;
|
---|
526 | }
|
---|
527 |
|
---|
528 | template <>
|
---|
529 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<12>()
|
---|
530 | {
|
---|
531 | Polygon_t polygon;
|
---|
532 | polygon.push_back( Vector(Bondlength,0.,0.));
|
---|
533 | polygon.push_back( Vector(-Bondlength, 0.0, 0.0));
|
---|
534 | const double temp_Bondlength = Bondlength*0.5*SQRT_3;
|
---|
535 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength, 0.0));
|
---|
536 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength*cos(0.4*M_PI), temp_Bondlength*sin(0.4*M_PI)));
|
---|
537 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength*cos(0.8*M_PI), temp_Bondlength*sin(0.8*M_PI)));
|
---|
538 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength*cos(1.2*M_PI), temp_Bondlength*sin(1.2*M_PI)));
|
---|
539 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength*cos(1.6*M_PI), temp_Bondlength*sin(1.6*M_PI)));
|
---|
540 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, -temp_Bondlength, 0.0));
|
---|
541 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, -temp_Bondlength*cos(0.4*M_PI), -temp_Bondlength*sin(0.4*M_PI)));
|
---|
542 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, -temp_Bondlength*cos(0.8*M_PI), -temp_Bondlength*sin(0.8*M_PI)));
|
---|
543 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, -temp_Bondlength*cos(1.2*M_PI), -temp_Bondlength*sin(1.2*M_PI)));
|
---|
544 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, -temp_Bondlength*cos(1.6*M_PI), -temp_Bondlength*sin(1.6*M_PI)));
|
---|
545 | ASSERT( polygon.size() == 12,
|
---|
546 | "SphericalPointDistribution::get<12>() - polygon has wrong size.");
|
---|
547 | return polygon;
|
---|
548 | }
|
---|
549 |
|
---|
550 | template <>
|
---|
551 | SphericalPointDistribution::Polygon_t SphericalPointDistribution::get<14>()
|
---|
552 | {
|
---|
553 | Polygon_t polygon;
|
---|
554 | polygon.push_back( Vector(Bondlength,0.,0.));
|
---|
555 | polygon.push_back( Vector(-Bondlength, 0.0, 0.0));
|
---|
556 | const double temp_Bondlength = Bondlength*0.5*SQRT_3;
|
---|
557 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength, 0.0));
|
---|
558 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength*cos(M_PI/3.0), temp_Bondlength*sin(M_PI/3.0)));
|
---|
559 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength*cos(2.0*M_PI/3.0), temp_Bondlength*sin(2.0*M_PI/3.0)));
|
---|
560 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, -temp_Bondlength, 0.0));
|
---|
561 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength*cos(4.0*M_PI/3.0), temp_Bondlength*sin(4.0*M_PI/3.0)));
|
---|
562 | polygon.push_back( Vector(temp_Bondlength/SQRT_3, temp_Bondlength*cos(5.0*M_PI/3.0), temp_Bondlength*sin(5.0*M_PI/3.0)));
|
---|
563 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*cos(M_PI/6.0), temp_Bondlength*sin(M_PI/6.0)));
|
---|
564 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*cos(M_PI/3.0 +M_PI/6.0), temp_Bondlength*sin(M_PI/3.0+M_PI/6.0)));
|
---|
565 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*cos(2.0*M_PI/3.0 +M_PI/6.0), temp_Bondlength*sin(2.0*M_PI/3.0 +M_PI/6.0)));
|
---|
566 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*cos(3.0*M_PI/3.0 +M_PI/6.0), temp_Bondlength*sin(3.0*M_PI/3.0 +M_PI/6.0)));
|
---|
567 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*cos(4.0*M_PI/3.0 +M_PI/6.0), temp_Bondlength*sin(4.0*M_PI/3.0 +M_PI/6.0)));
|
---|
568 | polygon.push_back( Vector(-temp_Bondlength/SQRT_3, temp_Bondlength*cos(5.0*M_PI/3.0 +M_PI/6.0), temp_Bondlength*sin(5.0*M_PI/3.0 +M_PI/6.0)));
|
---|
569 | ASSERT( polygon.size() == 14,
|
---|
570 | "SphericalPointDistribution::get<14>() - polygon has wrong size.");
|
---|
571 | return polygon;
|
---|
572 | }
|
---|
573 |
|
---|
574 | #endif /* SPHERICALPOINTDISTRIBUTION_HPP_ */
|
---|