Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
|
Last change
on this file since d920b9 was d920b9, checked in by Frederik Heber <heber@…>, 13 years ago |
|
Abstracted FragmentJob and introduced SystemCommandJob which has its former functionality.
- FragmentJob now has just virtual function Work(), not implemented.
- former command and outputfile is taken over by SystemCommandJob.
- a FragmentJob or derived class is default cstor'ed always with
JobId::IllegalJob.
- so far SystemCommandJob captures command's stdout and parses it back from
file. We use mkstemps() for creating a random file and popen() to pipe stdout
directly. For this we require boost::iostreams and ::filesystem.
- SystemCommandJob has virtual method extractString() to be adaptable to the
output of various system commands.
- changes almost everywhere due to SystemCommandJob taking place of
FragmentJob and FragmentJob::ptr and FragmentResult::ptr requirements.
- added FragmentWorker::dummyInit() to enforce binding of the executable to
all possible derived FragmentJob's.
- added unit test for SystemCommandJob.
- added FragmentJobStub that implements a no-brainer job for testing.
- NOTE: boost::iostreams is incompatible with MemDebug due to placement new.
|
-
Property mode
set to
100644
|
|
File size:
916 bytes
|
| Line | |
|---|
| 1 | /*
|
|---|
| 2 | * FragmentJobStub.hpp
|
|---|
| 3 | *
|
|---|
| 4 | * Created on: Feb 06, 2012
|
|---|
| 5 | * Author: heber
|
|---|
| 6 | */
|
|---|
| 7 |
|
|---|
| 8 | #ifndef FRAGMENTJOBSTUB_HPP_
|
|---|
| 9 | #define FRAGMENTJOBSTUB_HPP_
|
|---|
| 10 |
|
|---|
| 11 | // include config.h
|
|---|
| 12 | #ifdef HAVE_CONFIG_H
|
|---|
| 13 | #include <config.h>
|
|---|
| 14 | #endif
|
|---|
| 15 |
|
|---|
| 16 | #include "boost/serialization/export.hpp"
|
|---|
| 17 |
|
|---|
| 18 | #include "Jobs/FragmentJob.hpp"
|
|---|
| 19 |
|
|---|
| 20 | struct FragmentJobStub : public FragmentJob
|
|---|
| 21 | {
|
|---|
| 22 | FragmentJobStub(const JobId_t _JobId);
|
|---|
| 23 |
|
|---|
| 24 | FragmentResult::ptr Work();
|
|---|
| 25 |
|
|---|
| 26 | private:
|
|---|
| 27 | //!> private default cstor for serialization only
|
|---|
| 28 | FragmentJobStub();
|
|---|
| 29 |
|
|---|
| 30 | friend class boost::serialization::access;
|
|---|
| 31 | // serialization
|
|---|
| 32 | template <typename Archive>
|
|---|
| 33 | void serialize(Archive& ar, const unsigned int version)
|
|---|
| 34 | {
|
|---|
| 35 | ar & boost::serialization::base_object<FragmentJob>(*this);
|
|---|
| 36 | }
|
|---|
| 37 | };
|
|---|
| 38 |
|
|---|
| 39 | // we need to give this class a unique key for serialization
|
|---|
| 40 | // its is only serialized through its base class FragmentJob
|
|---|
| 41 | BOOST_CLASS_EXPORT_KEY(FragmentJobStub)
|
|---|
| 42 |
|
|---|
| 43 | #endif /* FRAGMENTJOBSTUB_HPP_ */
|
|---|
Note:
See
TracBrowser
for help on using the repository browser.
