source: src/Fragmentation/Automation/FragmentWorker.cpp@ d920b9

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since d920b9 was d920b9, checked in by Frederik Heber <heber@…>, 13 years ago

Abstracted FragmentJob and introduced SystemCommandJob which has its former functionality.

  • FragmentJob now has just virtual function Work(), not implemented.
  • former command and outputfile is taken over by SystemCommandJob.
  • a FragmentJob or derived class is default cstor'ed always with JobId::IllegalJob.
  • so far SystemCommandJob captures command's stdout and parses it back from file. We use mkstemps() for creating a random file and popen() to pipe stdout directly. For this we require boost::iostreams and ::filesystem.
  • SystemCommandJob has virtual method extractString() to be adaptable to the output of various system commands.
  • changes almost everywhere due to SystemCommandJob taking place of FragmentJob and FragmentJob::ptr and FragmentResult::ptr requirements.
  • added FragmentWorker::dummyInit() to enforce binding of the executable to all possible derived FragmentJob's.
  • added unit test for SystemCommandJob.
  • added FragmentJobStub that implements a no-brainer job for testing.
  • NOTE: boost::iostreams is incompatible with MemDebug due to placement new.
  • Property mode set to 100644
File size: 4.9 KB
RevLine 
[2eff32]1/*
[cd4a6e]2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2011 University of Bonn. All rights reserved.
5 * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
6 */
7
8/*
9 * \file FragmentWorker.cpp
10 *
11 * This file strongly follows the Serialization example from the boost::asio
12 * library (see client.cpp).
[2eff32]13 *
14 * Created on: Nov 18, 2011
15 * Author: heber
16 */
17
[f93842]18// include config.h
19#ifdef HAVE_CONFIG_H
20#include <config.h>
21#endif
22
[00d4fb]23// boost asio needs specific operator new
[2eff32]24#include <boost/asio.hpp>
[00d4fb]25
26#include "CodePatterns/MemDebug.hpp"
27
[2eff32]28#include <boost/bind.hpp>
29#include <iostream>
30#include <vector>
[af3aed]31#include "Connection.hpp" // Must come before boost/serialization headers.
[2eff32]32#include <boost/serialization/vector.hpp>
[af3aed]33#include "CodePatterns/Info.hpp"
[b0b64c]34#include "CodePatterns/Log.hpp"
[f0834d]35#include "Jobs/FragmentJob.hpp"
[d920b9]36#include "Jobs/SystemCommandJob.hpp"
[7670865]37#include "Results/FragmentResult.hpp"
[cd4a6e]38#include "FragmentWorker.hpp"
[2eff32]39
[35f587]40FragmentResult::ptr FragmentWorker::EmptyResult( new FragmentResult(JobId::NoJob, std::string("EmptyResult")) );
[ef2767]41
[d920b9]42/** Helper function to enforce binding of FragmentWorker to possible derived
43 * FragmentJob classes.
44 */
45void dummyInit() {
46 SystemCommandJob("/bin/false", "something", JobId::IllegalJob);
47}
48
[a636f8]49/// Constructor starts the asynchronous connect operation.
[8c9596]50FragmentWorker::FragmentWorker(
[a636f8]51 boost::asio::io_service& io_service,
52 const std::string& host,
53 const std::string& service) :
[a1b77d]54 connection_(io_service),
[0bdd51b]55 result(JobId::IllegalJob),
56 Exitflag(OkFlag)
[a636f8]57{
[af3aed]58 Info info(__FUNCTION__);
[a636f8]59 // Resolve the host name into an IP address.
60 boost::asio::ip::tcp::resolver resolver(io_service);
61 boost::asio::ip::tcp::resolver::query query(host, service);
62 boost::asio::ip::tcp::resolver::iterator endpoint_iterator =
63 resolver.resolve(query);
64 boost::asio::ip::tcp::endpoint endpoint = *endpoint_iterator;
[2eff32]65
[a636f8]66 // Start an asynchronous connect operation.
[e3a9c9]67 std::cout << "Connecting to endpoint " << endpoint << std::endl;
[a636f8]68 connection_.socket().async_connect(endpoint,
[8c9596]69 boost::bind(&FragmentWorker::handle_connect, this,
[e3a9c9]70 boost::asio::placeholders::error, ++endpoint_iterator));
[a636f8]71}
[2eff32]72
[a636f8]73/// Handle completion of a connect operation.
[e3a9c9]74void FragmentWorker::handle_connect(const boost::system::error_code& e,
75 boost::asio::ip::tcp::resolver::iterator endpoint_iterator)
[a636f8]76{
[ef2767]77 Info info(__FUNCTION__);
[a636f8]78 if (!e)
[2eff32]79 {
[a636f8]80 // Successfully established connection. Start operation to read the list
[cd4a6e]81 // of jobs. The connection::async_read() function will automatically
[a636f8]82 // decode the data that is read from the underlying socket.
[ef2767]83 LOG(1, "INFO: Receiving a job ...");
[b0b64c]84 connection_.async_read(job,
[083490]85 boost::bind(&FragmentWorker::handle_ReceiveJob, this,
[a636f8]86 boost::asio::placeholders::error));
[e3a9c9]87 } else if (endpoint_iterator != boost::asio::ip::tcp::resolver::iterator()) {
88 // Try the next endpoint.
89 connection_.socket().close();
90 boost::asio::ip::tcp::endpoint endpoint = *endpoint_iterator;
91 connection_.socket().async_connect(endpoint,
92 boost::bind(&FragmentWorker::handle_connect, this,
93 boost::asio::placeholders::error, ++endpoint_iterator));
94 } else {
[a636f8]95 // An error occurred. Log it and return. Since we are not starting a new
96 // operation the io_service will run out of work to do and the client will
97 // exit.
[0bdd51b]98 Exitflag = ErrorFlag;
[b0b64c]99 ELOG(1, e.message());
[2eff32]100 }
[a636f8]101}
[2eff32]102
[083490]103/// Callback function when job has been received.
104void FragmentWorker::handle_ReceiveJob(const boost::system::error_code& e)
[a636f8]105{
[b05673]106 Info info(__FUNCTION__);
[a636f8]107 if (!e)
[2eff32]108 {
[78ad7d]109 LOG(1, "INFO: Received job #" << job->getId() << ".");
110 if (job->getId() != JobId::NoJob) {
[c7deca]111 // Print out the data that was received.
[78ad7d]112 std::cout << "Job id: " << job->getId() << "\n";
[ef2767]113
[a1b77d]114 // do something .. right now: wait
[78ad7d]115 LOG(1, "INFO: Calculating job #" << job->getId() << " ...");
[35f587]116 FragmentResult::ptr result(job->Work());
[ef2767]117
118 // write the result to the server
[78ad7d]119 LOG(1, "INFO: Sending result for job #" << job->getId() << " ...");
[ef2767]120 connection_.async_write(result,
[083490]121 boost::bind(&FragmentWorker::handle_SendResult, this,
[ef2767]122 boost::asio::placeholders::error));
123
[c7deca]124 } else {
125 std::cout << "The server has no job for me." << std::endl;
[ef2767]126 // send out empty result
127 LOG(1, "INFO: Sending empty result ...");
128 connection_.async_write(EmptyResult,
[083490]129 boost::bind(&FragmentWorker::handle_SendResult, this,
[ef2767]130 boost::asio::placeholders::error));
[0bdd51b]131 Exitflag = NoJobFlag;
[c7deca]132 }
[2eff32]133 }
[a636f8]134 else
135 {
136 // An error occurred.
[0bdd51b]137 Exitflag = ErrorFlag;
[b0b64c]138 ELOG(1, e.message());
[a636f8]139 }
140
141 // Since we are not starting a new operation the io_service will run out of
142 // work to do and the client will exit.
143}
[0bdd51b]144
[083490]145/// Callback function when result has been sent.
146void FragmentWorker::handle_SendResult(const boost::system::error_code& e)
[ef2767]147{
148 Info info(__FUNCTION__);
149 // Nothing to do.
[78ad7d]150 LOG(1, "INFO: Job #" << job->getId() << " calculated and sent.");
[ef2767]151 // erase job
[d920b9]152 job.reset();
[ef2767]153}
154
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