| 1 | /*
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| 2 |  * Project: MoleCuilder
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| 3 |  * Description: creates and alters molecular systems
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| 4 |  * Copyright (C)  2010-2012 University of Bonn. All rights reserved.
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| 5 |  * 
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| 6 |  *
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| 7 |  *   This file is part of MoleCuilder.
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| 8 |  *
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| 9 |  *    MoleCuilder is free software: you can redistribute it and/or modify
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| 10 |  *    it under the terms of the GNU General Public License as published by
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| 11 |  *    the Free Software Foundation, either version 2 of the License, or
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| 12 |  *    (at your option) any later version.
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| 13 |  *
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| 14 |  *    MoleCuilder is distributed in the hope that it will be useful,
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| 15 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 16 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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| 17 |  *    GNU General Public License for more details.
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| 18 |  *
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| 19 |  *    You should have received a copy of the GNU General Public License
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| 20 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
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| 21 |  */
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| 22 | 
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| 23 | /*
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| 24 |  * MoleculeOrderDescriptor.cpp
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| 25 |  *
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| 26 |  *  Created on: Dec 7, 2010
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| 27 |  *      Author: heber
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| 28 |  */
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| 29 | 
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| 30 | // include config.h
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| 31 | #ifdef HAVE_CONFIG_H
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| 32 | #include <config.h>
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| 33 | #endif
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| 34 | 
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| 35 | #include "CodePatterns/MemDebug.hpp"
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| 36 | 
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| 37 | #include "MoleculeOrderDescriptor.hpp"
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| 38 | #include "MoleculeOrderDescriptor_impl.hpp"
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| 39 | 
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| 40 | #include "molecule.hpp"
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| 41 | 
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| 42 | using namespace std;
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| 43 | 
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| 44 | 
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| 45 | MoleculeOrderDescriptor_impl::MoleculeOrderDescriptor_impl(int _id) :
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| 46 |   id(_id)
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| 47 | {}
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| 48 | 
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| 49 | MoleculeOrderDescriptor_impl::~MoleculeOrderDescriptor_impl()
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| 50 | {}
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| 51 | 
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| 52 | bool MoleculeOrderDescriptor_impl::predicate(std::pair<moleculeId_t,molecule*> _molecule)
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| 53 | {
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| 54 |   molecule *mol = find();
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| 55 |   return (mol == _molecule.second);
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| 56 | }
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| 57 | 
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| 58 | MoleculeDescriptor MoleculeByOrder(int id){
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| 59 |   return MoleculeDescriptor(MoleculeDescriptor::impl_ptr(new MoleculeOrderDescriptor_impl(id)));
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| 60 | }
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| 61 | 
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| 62 | World::MoleculeSet& MoleculeOrderDescriptor_impl::getMolecules()
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| 63 | {
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| 64 |   return World::getInstance().molecules;
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| 65 | }
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| 66 | 
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| 67 | molecule* MoleculeOrderDescriptor_impl::find() {
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| 68 |   World::MoleculeSet &molecules = getMolecules();
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| 69 | 
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| 70 |   int i=0;
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| 71 |   molecule *mol = NULL;
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| 72 |   if (id == 0) {
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| 73 |     return NULL;
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| 74 |   } else if (id > 0) {
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| 75 |     World::MoleculeSet::internal_iterator res = molecules.begin_internal();
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| 76 |     for (; res != molecules.end_internal(); ++res) { // when iterator is normal, ++ goes forward!
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| 77 |       ++i;
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| 78 |       if (id == i) {
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| 79 |         mol = res->second;
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| 80 |         break;
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| 81 |       }
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| 82 |     }
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| 83 |   } else {
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| 84 |     World::MoleculeSet::reverse_internal_iterator res = molecules.rbegin_internal();
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| 85 |     for (; res != molecules.rend_internal(); ++res) {  // when iterator is reverse, ++ goes backward!
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| 86 |       --i;
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| 87 |       if (id == i) {
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| 88 |         mol = res->second;
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| 89 |         break;
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| 90 |       }
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| 91 |     }
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| 92 |   }
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| 93 | 
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| 94 |   return mol;
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| 95 | }
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| 96 | 
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| 97 | vector<molecule*> MoleculeOrderDescriptor_impl::findAll(){
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| 98 |   molecule *res = find();
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| 99 |   return (res)?(vector<molecule*>(1,res)):(vector<molecule*>());
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| 100 | }
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