| [92d756] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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| [0aa122] | 4 | * Copyright (C)  2010-2012 University of Bonn. All rights reserved. | 
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| [94d5ac6] | 5 | * | 
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|  | 6 | * | 
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|  | 7 | *   This file is part of MoleCuilder. | 
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|  | 8 | * | 
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|  | 9 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
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|  | 10 | *    it under the terms of the GNU General Public License as published by | 
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|  | 11 | *    the Free Software Foundation, either version 2 of the License, or | 
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|  | 12 | *    (at your option) any later version. | 
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|  | 13 | * | 
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|  | 14 | *    MoleCuilder is distributed in the hope that it will be useful, | 
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|  | 15 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
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|  | 16 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
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|  | 17 | *    GNU General Public License for more details. | 
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|  | 18 | * | 
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|  | 19 | *    You should have received a copy of the GNU General Public License | 
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|  | 20 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
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| [92d756] | 21 | */ | 
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|  | 22 |  | 
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|  | 23 | /* | 
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|  | 24 | * MoleculeOrderDescriptor.cpp | 
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|  | 25 | * | 
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|  | 26 | *  Created on: Dec 7, 2010 | 
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|  | 27 | *      Author: heber | 
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|  | 28 | */ | 
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|  | 29 |  | 
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|  | 30 | // include config.h | 
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|  | 31 | #ifdef HAVE_CONFIG_H | 
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|  | 32 | #include <config.h> | 
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|  | 33 | #endif | 
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|  | 34 |  | 
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| [9eb71b3] | 35 | //#include "CodePatterns/MemDebug.hpp" | 
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| [92d756] | 36 |  | 
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|  | 37 | #include "MoleculeOrderDescriptor.hpp" | 
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|  | 38 | #include "MoleculeOrderDescriptor_impl.hpp" | 
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|  | 39 |  | 
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|  | 40 | #include "molecule.hpp" | 
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|  | 41 |  | 
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|  | 42 | using namespace std; | 
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|  | 43 |  | 
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|  | 44 |  | 
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|  | 45 | MoleculeOrderDescriptor_impl::MoleculeOrderDescriptor_impl(int _id) : | 
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|  | 46 | id(_id) | 
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|  | 47 | {} | 
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|  | 48 |  | 
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|  | 49 | MoleculeOrderDescriptor_impl::~MoleculeOrderDescriptor_impl() | 
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|  | 50 | {} | 
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|  | 51 |  | 
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| [97445f] | 52 | bool MoleculeOrderDescriptor_impl::predicate(const std::pair<moleculeId_t,const molecule*> _molecule) const | 
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| [92d756] | 53 | { | 
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| [97445f] | 54 | const molecule *mol = find(); | 
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| [92d756] | 55 | return (mol == _molecule.second); | 
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|  | 56 | } | 
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|  | 57 |  | 
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|  | 58 | MoleculeDescriptor MoleculeByOrder(int id){ | 
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|  | 59 | return MoleculeDescriptor(MoleculeDescriptor::impl_ptr(new MoleculeOrderDescriptor_impl(id))); | 
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|  | 60 | } | 
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|  | 61 |  | 
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| [ea7a50] | 62 | World::MoleculeSet& MoleculeOrderDescriptor_impl::getMolecules() | 
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|  | 63 | { | 
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|  | 64 | return World::getInstance().molecules; | 
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|  | 65 | } | 
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|  | 66 |  | 
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| [97445f] | 67 | const World::MoleculeSet& MoleculeOrderDescriptor_impl::getMolecules() const | 
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|  | 68 | { | 
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|  | 69 | return World::getInstance().molecules; | 
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|  | 70 | } | 
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|  | 71 |  | 
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| [ea7a50] | 72 | molecule* MoleculeOrderDescriptor_impl::find() { | 
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| [92d756] | 73 | World::MoleculeSet &molecules = getMolecules(); | 
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|  | 74 |  | 
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|  | 75 | int i=0; | 
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|  | 76 | molecule *mol = NULL; | 
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| [170ba6] | 77 | if (id == 0) { | 
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|  | 78 | return NULL; | 
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|  | 79 | } else if (id > 0) { | 
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| [ea7a50] | 80 | World::MoleculeSet::internal_iterator res = molecules.begin_internal(); | 
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|  | 81 | for (; res != molecules.end_internal(); ++res) { // when iterator is normal, ++ goes forward! | 
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| [92d756] | 82 | ++i; | 
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| [12c4cb] | 83 | if (id == i) { | 
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|  | 84 | mol = res->second; | 
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| [92d756] | 85 | break; | 
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| [12c4cb] | 86 | } | 
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| [92d756] | 87 | } | 
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|  | 88 | } else { | 
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| [ea7a50] | 89 | World::MoleculeSet::reverse_internal_iterator res = molecules.rbegin_internal(); | 
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| [12c4cb] | 90 | for (; res != molecules.rend_internal(); ++res) {  // when iterator is reverse, ++ goes backward! | 
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| [92d756] | 91 | --i; | 
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| [12c4cb] | 92 | if (id == i) { | 
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|  | 93 | mol = res->second; | 
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| [92d756] | 94 | break; | 
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| [12c4cb] | 95 | } | 
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| [92d756] | 96 | } | 
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|  | 97 | } | 
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|  | 98 |  | 
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|  | 99 | return mol; | 
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|  | 100 | } | 
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|  | 101 |  | 
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| [97445f] | 102 | const molecule* MoleculeOrderDescriptor_impl::find() const { | 
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|  | 103 | const World::MoleculeSet &molecules = getMolecules(); | 
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|  | 104 |  | 
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|  | 105 | int i=0; | 
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|  | 106 | const molecule *mol = NULL; | 
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|  | 107 | if (id == 0) { | 
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|  | 108 | return NULL; | 
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|  | 109 | } else if (id > 0) { | 
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|  | 110 | World::MoleculeSet::const_iterator res = molecules.begin(); | 
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|  | 111 | for (; res != molecules.end(); ++res) { // when iterator is normal, ++ goes forward! | 
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|  | 112 | ++i; | 
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|  | 113 | if (id == i) { | 
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|  | 114 | mol = res->second; | 
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|  | 115 | break; | 
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|  | 116 | } | 
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|  | 117 | } | 
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|  | 118 | } else { | 
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|  | 119 | World::MoleculeSet::const_reverse_iterator res = molecules.rbegin(); | 
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|  | 120 | for (; res != molecules.rend(); ++res) {  // when iterator is reverse, ++ goes backward! | 
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|  | 121 | --i; | 
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|  | 122 | if (id == i) { | 
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|  | 123 | mol = res->second; | 
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|  | 124 | break; | 
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|  | 125 | } | 
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|  | 126 | } | 
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|  | 127 | } | 
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|  | 128 |  | 
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|  | 129 | return mol; | 
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|  | 130 | } | 
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|  | 131 |  | 
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|  | 132 |  | 
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| [92d756] | 133 | vector<molecule*> MoleculeOrderDescriptor_impl::findAll(){ | 
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|  | 134 | molecule *res = find(); | 
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|  | 135 | return (res)?(vector<molecule*>(1,res)):(vector<molecule*>()); | 
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|  | 136 | } | 
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| [97445f] | 137 |  | 
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|  | 138 | vector<const molecule*> MoleculeOrderDescriptor_impl::findAll() const { | 
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|  | 139 | const molecule *res = find(); | 
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|  | 140 | return (res)?(vector<const molecule*>(1,res)):(vector<const molecule*>()); | 
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|  | 141 | } | 
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