| [83c09a] | 1 | /* | 
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|  | 2 | * Box.hpp | 
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|  | 3 | * | 
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|  | 4 | *  Created on: Jun 30, 2010 | 
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|  | 5 | *      Author: crueger | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | #ifndef BOX_HPP_ | 
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|  | 9 | #define BOX_HPP_ | 
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|  | 10 |  | 
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| [3dcb1f] | 11 | class Matrix; | 
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|  | 12 | class Vector; | 
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| [83c09a] | 13 |  | 
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| [89e820] | 14 | #include <list> | 
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|  | 15 | #include "VectorSet.hpp" | 
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|  | 16 |  | 
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| [abd8f7] | 17 | /** | 
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|  | 18 | * A simple class that can be used to store periodic Boxes | 
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|  | 19 | * in the form of a parallelepiped. | 
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|  | 20 | * | 
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|  | 21 | * Stores a matrix that can be used to translate from periodic | 
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|  | 22 | * [0,1) space as well as the inverse that is needed to | 
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|  | 23 | * translate back to that space. | 
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|  | 24 | */ | 
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| [83c09a] | 25 | class Box | 
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|  | 26 | { | 
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|  | 27 | public: | 
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|  | 28 | Box(); | 
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| [7579a4b] | 29 | Box(const Box&); | 
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| [83c09a] | 30 | virtual ~Box(); | 
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|  | 31 |  | 
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| [abd8f7] | 32 | /** | 
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|  | 33 | * Get the matrix describing the form of the parallelepiped | 
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|  | 34 | */ | 
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| [7579a4b] | 35 | const Matrix &getM() const; | 
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| [abd8f7] | 36 |  | 
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|  | 37 | /** | 
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|  | 38 | * Get the inverse of the matrix M (see above). | 
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|  | 39 | */ | 
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| [7579a4b] | 40 | const Matrix &getMinv() const; | 
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| [abd8f7] | 41 |  | 
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|  | 42 | /** | 
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|  | 43 | * Set the form of the parallelepiped. | 
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|  | 44 | */ | 
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| [83c09a] | 45 | void setM(Matrix); | 
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| [7579a4b] | 46 |  | 
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|  | 47 | Box &operator=(const Box&); | 
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|  | 48 | Box &operator=(const Matrix&); | 
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|  | 49 |  | 
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| [abd8f7] | 50 | /** | 
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|  | 51 | * Translate a point from [0,1) to the boxed space. | 
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|  | 52 | */ | 
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| [014475] | 53 | Vector translateIn(const Vector &point) const; | 
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| [abd8f7] | 54 |  | 
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|  | 55 | /** | 
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|  | 56 | * Translate a point from the boxed space to the [0,1) space. | 
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|  | 57 | */ | 
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| [014475] | 58 | Vector translateOut(const Vector &point) const; | 
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| [3dcb1f] | 59 |  | 
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| [abd8f7] | 60 | /** | 
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|  | 61 | * Wrap a point so that it will lie within the space defined by the box. | 
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|  | 62 | */ | 
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| [014475] | 63 | Vector WrapPeriodically(const Vector &point) const; | 
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| [abd8f7] | 64 |  | 
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| [0ff6b5] | 65 | /** | 
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|  | 66 | * Checks whether a given vector is inside the box. | 
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|  | 67 | */ | 
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|  | 68 | bool isInside(const Vector &point) const; | 
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|  | 69 |  | 
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| [abd8f7] | 70 | /** | 
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|  | 71 | * Produce corresponding points in several adjacent boxes. | 
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| [a630fd] | 72 | * | 
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|  | 73 | * n specifies the number of times the point is expanded. | 
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|  | 74 | * Carefull, needs O(n^3) time and produces as many vectors. | 
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| [abd8f7] | 75 | */ | 
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| [7ac4af] | 76 | VECTORSET(std::list) explode(const Vector &point,int n) const; | 
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|  | 77 | VECTORSET(std::list) explode(const Vector &point) const; | 
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| [527de2] | 78 |  | 
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| [abd8f7] | 79 | /** | 
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|  | 80 | * Calculate the distance of two points in the periodic space | 
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|  | 81 | * defined by this box | 
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|  | 82 | */ | 
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| [014475] | 83 | double periodicDistanceSquared(const Vector &point1,const Vector &point2) const; | 
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| [abd8f7] | 84 |  | 
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|  | 85 | /** | 
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|  | 86 | * Calculate the distance of two points in the periodic space | 
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|  | 87 | * defined by this box | 
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|  | 88 | */ | 
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| [014475] | 89 | double periodicDistance(const Vector &point1,const Vector &point2) const; | 
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| [f429d7] | 90 |  | 
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| [83c09a] | 91 | private: | 
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|  | 92 | Matrix *M;    //!< Defines the layout of the box | 
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|  | 93 | Matrix *Minv; //!< Inverse of M to avoid recomputation | 
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|  | 94 | }; | 
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|  | 95 |  | 
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|  | 96 | #endif /* BOX_HPP_ */ | 
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