source: src/Atom/atom_bondedparticleinfo.hpp@ 97dff0

Last change on this file since 97dff0 was d760bb, checked in by Frederik Heber <heber@…>, 12 years ago

REFACTOR: PowerSetGenerator now creates all orders in one go, not limited to one by one increments.

  • atom_bondedparticle's MaxOrder is not a bool but an int containing the desired final order set by CheckOrderAtSite and compared to AdaptiveOrder to obtain its old meaning.
  • UniqueFragments now contains a vector of n Graphs to place n-body fragments in that are later combined. Also, cleaned up a lot of old functions and merged stuff into cstor. FreeAllOrdersList() and CombineAllOrderListIntoOne() have been adapted accordingly.
  • Fragmentation::FragmentBOSSANOVA now uses fully again FragmentLowerOrdersList which now has the above n slots to place n-body fragments in and which is passed by ref to UniqueFragments.
  • SPFragmentGenerator now always stores the current fragment, only in a specific slot in UniqueFragment's Graphs, and it recurses if there are enough SP levels and plces left.
  • FIX: BondsPerShortestPath properly prints and informs about resetting the path list.
  • We checked extra that BondFragments come out exactly as before (same order because of the Graph being a map naturally). The only difference is the OrderAtSite file which now has more than 0/1 values in the second entry.
  • Property mode set to 100644
File size: 2.7 KB
Line 
1/*
2 * atom_bondedparticleinfo.hpp
3 *
4 * Created on: Oct 19, 2009
5 * Author: heber
6 */
7
8#ifndef ATOM_BONDEDPARTICLEINFO_HPP_
9#define ATOM_BONDEDPARTICLEINFO_HPP_
10
11
12using namespace std;
13
14/*********************************************** includes ***********************************/
15
16// include config.h
17#ifdef HAVE_CONFIG_H
18#include <config.h>
19#endif
20
21//#include "atom_observable.hpp"
22#include "Bond/bond.hpp"
23
24#include <list>
25
26/****************************************** forward declarations *****************************/
27
28class BondedParticle;
29
30#define BondList list<bond::ptr >
31
32/********************************************** declarations *******************************/
33
34class BondedParticleInfo // : public virtual AtomObservable // must be virtual(!)
35{
36 friend class BondedParticle;
37public:
38 unsigned char AdaptiveOrder; //!< current present bond order at site (0 means "not set")
39 unsigned char MaxOrder; //!< desired maximum order of this atom (0 means "not set")
40
41 BondedParticleInfo();
42 virtual ~BondedParticleInfo();
43
44 /** Pushes back another step in all trajectory vectors.
45 *
46 * This allows to extend all trajectories contained in different classes
47 * consistently. This is implemented by the topmost class which calls the
48 * real functions, \sa AppendTrajectoryStep(), by all necessary subclasses.
49 */
50 virtual void UpdateSteps()=0;
51
52 /** Const accessor to ListOfBonds of WorldTime::CurrentTime.
53 *
54 * @return ListOfBonds[WorldTime::CurrentTime]
55 */
56 const BondList& getListOfBonds() const;
57
58 /** Accessor to ListOfBonds of WorldTime::CurrentTime.
59 *
60 * Note, new empty BondList is returned if array entry at upper boundary is
61 * accessed. Beyond std will issue exception due to out-of-range access.
62 *
63 * @return ListOfBonds[WorldTime::CurrentTime]
64 */
65// BondList& getListOfBonds();
66
67 /** Const Accessor ListOfBonds of any present time step.
68 *
69 * @param _step time step to access
70 * @return ListOfBonds[_step].
71 */
72 const BondList& getListOfBondsAtStep(unsigned int _step) const;
73
74 /** Accessor ListOfBonds of any present time step.
75 *
76 * Note, new empty BondList is returned if array entry at upper boundary is
77 * accessed. Beyond std will issue exception due to out-of-range access.
78 *
79 * @param _step time step to access
80 * @return ListOfBonds[_step].
81 */
82// BondList& getListOfBondsAtStep(unsigned int _step);
83
84protected:
85 /** Function used by this and inheriting classes to extend the ListOfBonds
86 * vector.
87 */
88 void AppendTrajectoryStep();
89
90 std::vector<BondList> ListOfBonds; //!< list of all bonds
91 static BondList emptyList; //!< empty list to return when step is not present
92};
93
94
95#endif /* ATOM_BONDEDPARTICLEINFO_HPP_ */
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