1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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6 | */
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7 |
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8 | /*
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9 | * ConvexEnvelopeAction.cpp
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10 | *
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11 | * Created on: May 12, 2010
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12 | * Author: heber
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13 | */
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14 |
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15 | // include config.h
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16 | #ifdef HAVE_CONFIG_H
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17 | #include <config.h>
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18 | #endif
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19 |
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20 | #include "CodePatterns/MemDebug.hpp"
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21 |
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22 | #include "CodePatterns/Log.hpp"
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23 | #include "config.hpp"
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24 | #include "LinkedCell/linkedcell.hpp"
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25 | #include "LinkedCell/PointCloudAdaptor.hpp"
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26 | #include "molecule.hpp"
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27 | #include "Tesselation/boundary.hpp"
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28 | #include "Tesselation/tesselation.hpp"
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29 | #include "World.hpp"
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30 |
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31 | #include <iostream>
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32 | #include <string>
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33 |
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34 | #include "Actions/TesselationAction/ConvexEnvelopeAction.hpp"
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35 |
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36 | using namespace MoleCuilder;
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37 |
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38 | // and construct the stuff
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39 | #include "ConvexEnvelopeAction.def"
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40 | #include "Action_impl_pre.hpp"
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41 | /** =========== define the function ====================== */
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42 | Action::state_ptr TesselationConvexEnvelopeAction::performCall() {
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43 | molecule * mol = NULL;
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44 | bool Success = true;
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45 | config *configuration = World::getInstance().getConfig();
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46 |
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47 | // obtain information
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48 | getParametersfromValueStorage();
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49 |
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50 | for (World::MoleculeSelectionIterator iter = World::getInstance().beginMoleculeSelection(); iter != World::getInstance().endMoleculeSelection(); ++iter) {
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51 | mol = iter->second;
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52 | class Tesselation *TesselStruct = NULL;
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53 | const LinkedCell_deprecated *LCList = NULL;
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54 | LOG(0, "Evaluating volume of the convex envelope.");
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55 | LOG(1, "Storing tecplot convex data in " << params.filenameConvex << ".");
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56 | LOG(1, "Storing tecplot non-convex data in " << params.filenameNonConvex << ".");
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57 | PointCloudAdaptor<molecule> cloud(mol, mol->name);
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58 | LCList = new LinkedCell_deprecated(cloud, 100.);
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59 | //Boundaries *BoundaryPoints = NULL;
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60 | //FindConvexBorder(mol, BoundaryPoints, TesselStruct, LCList, argv[argptr]);
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61 | // TODO: Beide Funktionen sollten streams anstelle des Filenamen benutzen, besser fuer unit tests
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62 | FindNonConvexBorder(mol, TesselStruct, LCList, 50., params.filenameNonConvex.string().c_str());
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63 | //RemoveAllBoundaryPoints(TesselStruct, mol, argv[argptr]);
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64 | const double volumedifference = ConvexizeNonconvexEnvelope(TesselStruct, mol, params.filenameConvex.string().c_str());
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65 | const double clustervolume = TesselStruct->getVolumeOfConvexEnvelope(configuration->GetIsAngstroem());
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66 | LOG(0, "The tesselated volume area is " << clustervolume << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3.");
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67 | LOG(0, "The non-convex tesselated volume area is " << clustervolume-volumedifference << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3.");
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68 | delete(TesselStruct);
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69 | delete(LCList);
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70 | }
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71 | if (Success)
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72 | return Action::success;
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73 | else
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74 | return Action::failure;
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75 | }
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76 |
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77 | Action::state_ptr TesselationConvexEnvelopeAction::performUndo(Action::state_ptr _state) {
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78 | // TesselationConvexEnvelopeState *state = assert_cast<TesselationConvexEnvelopeState*>(_state.get());
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79 |
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80 | // string newName = state->mol->getName();
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81 | // state->mol->setName(state->lastName);
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82 |
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83 | return Action::failure;
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84 | }
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85 |
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86 | Action::state_ptr TesselationConvexEnvelopeAction::performRedo(Action::state_ptr _state){
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87 | // Undo and redo have to do the same for this action
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88 | return performUndo(_state);
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89 | }
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90 |
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91 | bool TesselationConvexEnvelopeAction::canUndo() {
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92 | return false;
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93 | }
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94 |
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95 | bool TesselationConvexEnvelopeAction::shouldUndo() {
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96 | return false;
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97 | }
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98 | /** =========== end of function ====================== */
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