[bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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| 4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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[97ebf8] | 8 | /*
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| 9 | * ConvexEnvelopeAction.cpp
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| 10 | *
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| 11 | * Created on: May 12, 2010
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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[bf3817] | 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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[ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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[112b09] | 21 |
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[628b52] | 22 | #include "boundary.hpp"
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[34c43a] | 23 | #include "CodePatterns/Log.hpp"
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| 24 | #include "CodePatterns/Verbose.hpp"
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[628b52] | 25 | #include "config.hpp"
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| 26 | #include "linkedcell.hpp"
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| 27 | #include "molecule.hpp"
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[34c43a] | 28 | #include "PointCloudAdaptor.hpp"
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[88b400] | 29 | #include "tesselation.hpp"
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[628b52] | 30 | #include "World.hpp"
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[97ebf8] | 31 |
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| 32 | #include <iostream>
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| 33 | #include <string>
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| 34 |
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[1fd675] | 35 | #include "Actions/TesselationAction/ConvexEnvelopeAction.hpp"
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[8ae5d5] | 36 |
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[ce7fdc] | 37 | using namespace MoleCuilder;
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| 38 |
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[1fd675] | 39 | // and construct the stuff
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| 40 | #include "ConvexEnvelopeAction.def"
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| 41 | #include "Action_impl_pre.hpp"
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| 42 | /** =========== define the function ====================== */
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[97ebf8] | 43 | Action::state_ptr TesselationConvexEnvelopeAction::performCall() {
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| 44 | molecule * mol = NULL;
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[8ae5d5] | 45 | bool Success = true;
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[f6bd32] | 46 | config *configuration = World::getInstance().getConfig();
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[97ebf8] | 47 |
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[1fd675] | 48 | // obtain information
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| 49 | getParametersfromValueStorage();
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[97ebf8] | 50 |
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[8ae5d5] | 51 | for (World::MoleculeSelectionIterator iter = World::getInstance().beginMoleculeSelection(); iter != World::getInstance().endMoleculeSelection(); ++iter) {
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| 52 | mol = iter->second;
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[97ebf8] | 53 | class Tesselation *TesselStruct = NULL;
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| 54 | const LinkedCell *LCList = NULL;
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| 55 | DoLog(0) && (Log() << Verbose(0) << "Evaluating volume of the convex envelope.");
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[1fd675] | 56 | DoLog(1) && (Log() << Verbose(1) << "Storing tecplot convex data in " << params.filenameConvex << "." << endl);
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| 57 | DoLog(1) && (Log() << Verbose(1) << "Storing tecplot non-convex data in " << params.filenameNonConvex << "." << endl);
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[caa06ef] | 58 | PointCloudAdaptor<molecule> cloud(mol, mol->name);
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[34c43a] | 59 | LCList = new LinkedCell(cloud, 100.);
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[25b9d2] | 60 | //Boundaries *BoundaryPoints = NULL;
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[bdc91e] | 61 | //FindConvexBorder(mol, BoundaryPoints, TesselStruct, LCList, argv[argptr]);
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[97ebf8] | 62 | // TODO: Beide Funktionen sollten streams anstelle des Filenamen benutzen, besser fuer unit tests
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[e4afb4] | 63 | FindNonConvexBorder(mol, TesselStruct, LCList, 50., params.filenameNonConvex.string().c_str());
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[97ebf8] | 64 | //RemoveAllBoundaryPoints(TesselStruct, mol, argv[argptr]);
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[e4afb4] | 65 | const double volumedifference = ConvexizeNonconvexEnvelope(TesselStruct, mol, params.filenameConvex.string().c_str());
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[f6bd32] | 66 | const double clustervolume = VolumeOfConvexEnvelope(TesselStruct, configuration);
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| 67 | DoLog(0) && (Log() << Verbose(0) << "The tesselated volume area is " << clustervolume << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3." << endl);
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| 68 | DoLog(0) && (Log() << Verbose(0) << "The non-convex tesselated volume area is " << clustervolume-volumedifference << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3." << endl);
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[97ebf8] | 69 | delete(TesselStruct);
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| 70 | delete(LCList);
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| 71 | }
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[8ae5d5] | 72 | if (Success)
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| 73 | return Action::success;
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| 74 | else
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| 75 | return Action::failure;
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[97ebf8] | 76 | }
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| 77 |
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| 78 | Action::state_ptr TesselationConvexEnvelopeAction::performUndo(Action::state_ptr _state) {
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| 79 | // TesselationConvexEnvelopeState *state = assert_cast<TesselationConvexEnvelopeState*>(_state.get());
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| 80 |
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| 81 | // string newName = state->mol->getName();
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| 82 | // state->mol->setName(state->lastName);
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| 83 |
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| 84 | return Action::failure;
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| 85 | }
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| 86 |
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| 87 | Action::state_ptr TesselationConvexEnvelopeAction::performRedo(Action::state_ptr _state){
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| 88 | // Undo and redo have to do the same for this action
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| 89 | return performUndo(_state);
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| 90 | }
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| 91 |
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| 92 | bool TesselationConvexEnvelopeAction::canUndo() {
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| 93 | return false;
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| 94 | }
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| 95 |
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| 96 | bool TesselationConvexEnvelopeAction::shouldUndo() {
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| 97 | return false;
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| 98 | }
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[1fd675] | 99 | /** =========== end of function ====================== */
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