| [bcf653] | 1 | /*
 | 
|---|
 | 2 |  * Project: MoleCuilder
 | 
|---|
 | 3 |  * Description: creates and alters molecular systems
 | 
|---|
| [0aa122] | 4 |  * Copyright (C)  2010-2012 University of Bonn. All rights reserved.
 | 
|---|
| [bcf653] | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
 | 
|---|
 | 6 |  */
 | 
|---|
 | 7 | 
 | 
|---|
| [97ebf8] | 8 | /*
 | 
|---|
 | 9 |  * VerletIntegrationAction.cpp
 | 
|---|
 | 10 |  *
 | 
|---|
 | 11 |  *  Created on: May 10, 2010
 | 
|---|
 | 12 |  *      Author: heber
 | 
|---|
 | 13 |  */
 | 
|---|
 | 14 | 
 | 
|---|
| [bf3817] | 15 | // include config.h
 | 
|---|
 | 16 | #ifdef HAVE_CONFIG_H
 | 
|---|
 | 17 | #include <config.h>
 | 
|---|
 | 18 | #endif
 | 
|---|
 | 19 | 
 | 
|---|
| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
 | 
|---|
| [112b09] | 21 | 
 | 
|---|
| [6f0841] | 22 | #include "Atom/atom.hpp"
 | 
|---|
 | 23 | #include "Atom/AtomSet.hpp"
 | 
|---|
| [ad011c] | 24 | #include "CodePatterns/Log.hpp"
 | 
|---|
 | 25 | #include "CodePatterns/Verbose.hpp"
 | 
|---|
| [435065] | 26 | #include "Dynamics/VerletForceIntegration.hpp"
 | 
|---|
 | 27 | #include "molecule.hpp"
 | 
|---|
| [1a3c26] | 28 | #include "World.hpp"
 | 
|---|
| [97ebf8] | 29 | 
 | 
|---|
| [435065] | 30 | #include <vector>
 | 
|---|
| [97ebf8] | 31 | #include <iostream>
 | 
|---|
 | 32 | #include <fstream>
 | 
|---|
 | 33 | #include <string>
 | 
|---|
 | 34 | 
 | 
|---|
| [1fd675] | 35 | #include "Actions/MoleculeAction/VerletIntegrationAction.hpp"
 | 
|---|
| [bcd16a] | 36 | 
 | 
|---|
| [ce7fdc] | 37 | using namespace MoleCuilder;
 | 
|---|
 | 38 | 
 | 
|---|
| [1fd675] | 39 | // and construct the stuff
 | 
|---|
 | 40 | #include "VerletIntegrationAction.def"
 | 
|---|
 | 41 | #include "Action_impl_pre.hpp"
 | 
|---|
 | 42 | /** =========== define the function ====================== */
 | 
|---|
| [97ebf8] | 43 | Action::state_ptr MoleculeVerletIntegrationAction::performCall() {
 | 
|---|
| [47d041] | 44 |   LOG(1, "Parsing forces file and Verlet integrating.");
 | 
|---|
| [435065] | 45 |   // TODO: sollte besser stream nutzen, nicht filename direkt (es sei denn, ist prefix), besser fuer unit test
 | 
|---|
 | 46 |   char outputname[MAXSTRINGSIZE];
 | 
|---|
 | 47 |   strcpy(outputname, params.forcesfile.string().c_str());
 | 
|---|
 | 48 |   AtomSetMixin<std::vector<atom *> > set(World::getInstance().getSelectedAtoms());
 | 
|---|
 | 49 |   for (int step = 0; step < params.MDSteps; ++step) {
 | 
|---|
 | 50 |     VerletForceIntegration<std::vector<atom *> > Verlet(set, params.Deltat, step, false);
 | 
|---|
 | 51 |     if (!Verlet(outputname, 1, 0, params.FixedCenterOfMass))
 | 
|---|
| [47d041] | 52 |       LOG(2, "File " << params.forcesfile << " not found.");
 | 
|---|
| [97ebf8] | 53 |     else
 | 
|---|
| [47d041] | 54 |       LOG(2, "File " << params.forcesfile << " found and parsed.");
 | 
|---|
| [97ebf8] | 55 |   }
 | 
|---|
| [435065] | 56 | 
 | 
|---|
| [bcd16a] | 57 |   return Action::success;
 | 
|---|
| [97ebf8] | 58 | }
 | 
|---|
 | 59 | 
 | 
|---|
 | 60 | Action::state_ptr MoleculeVerletIntegrationAction::performUndo(Action::state_ptr _state) {
 | 
|---|
 | 61 | //  MoleculeVerletIntegrationState *state = assert_cast<MoleculeVerletIntegrationState*>(_state.get());
 | 
|---|
 | 62 | 
 | 
|---|
 | 63 | //  string newName = state->mol->getName();
 | 
|---|
 | 64 | //  state->mol->setName(state->lastName);
 | 
|---|
 | 65 | 
 | 
|---|
 | 66 |   return Action::failure;
 | 
|---|
 | 67 | }
 | 
|---|
 | 68 | 
 | 
|---|
 | 69 | Action::state_ptr MoleculeVerletIntegrationAction::performRedo(Action::state_ptr _state){
 | 
|---|
| [e69c87] | 70 |   return Action::failure;
 | 
|---|
| [97ebf8] | 71 | }
 | 
|---|
 | 72 | 
 | 
|---|
 | 73 | bool MoleculeVerletIntegrationAction::canUndo() {
 | 
|---|
| [e69c87] | 74 |   return true;
 | 
|---|
| [97ebf8] | 75 | }
 | 
|---|
 | 76 | 
 | 
|---|
 | 77 | bool MoleculeVerletIntegrationAction::shouldUndo() {
 | 
|---|
| [e69c87] | 78 |   return true;
 | 
|---|
| [97ebf8] | 79 | }
 | 
|---|
| [1fd675] | 80 | /** =========== end of function ====================== */
 | 
|---|