source: src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp@ 6d6b54

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 6d6b54 was 112b09, checked in by Tillmann Crueger <crueger@…>, 15 years ago

Added #include "Helpers/MemDebug.hpp" to all .cpp files

  • Property mode set to 100644
File size: 3.6 KB
Line 
1/*
2 * LinearInterpolationofTrajectoriesAction.cpp
3 *
4 * Created on: May 10, 2010
5 * Author: heber
6 */
7
8#include "Helpers/MemDebug.hpp"
9
10#include "Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp"
11
12#include <iostream>
13#include <fstream>
14#include <string>
15
16using namespace std;
17
18#include "UIElements/UIFactory.hpp"
19#include "UIElements/Dialog.hpp"
20#include "Actions/MapOfActions.hpp"
21
22#include "atom.hpp"
23#include "defs.hpp"
24#include "log.hpp"
25#include "molecule.hpp"
26#include "verbose.hpp"
27#include "World.hpp"
28
29/****** MoleculeLinearInterpolationofTrajectoriesAction *****/
30
31// memento to remember the state when undoing
32
33//class MoleculeLinearInterpolationofTrajectoriesState : public ActionState {
34//public:
35// MoleculeLinearInterpolationofTrajectoriesState(molecule* _mol,std::string _lastName) :
36// mol(_mol),
37// lastName(_lastName)
38// {}
39// molecule* mol;
40// std::string lastName;
41//};
42
43const char MoleculeLinearInterpolationofTrajectoriesAction::NAME[] = "linear-interpolate";
44
45MoleculeLinearInterpolationofTrajectoriesAction::MoleculeLinearInterpolationofTrajectoriesAction() :
46 Action(NAME)
47{}
48
49MoleculeLinearInterpolationofTrajectoriesAction::~MoleculeLinearInterpolationofTrajectoriesAction()
50{}
51
52Action::state_ptr MoleculeLinearInterpolationofTrajectoriesAction::performCall() {
53 string filename;
54 Dialog *dialog = UIFactory::getInstance().makeDialog();
55 molecule *mol = NULL;
56 int start = -1;
57 int end = -1;
58 bool IdMapping = true;
59
60
61 dialog->queryString(NAME, &filename, MapOfActions::getInstance().getDescription(NAME));
62 dialog->queryInt("start-mol", &start, MapOfActions::getInstance().getDescription("start"));
63 dialog->queryInt("end-mol", &start, MapOfActions::getInstance().getDescription("end"));
64 dialog->queryMolecule("molecule-by-id", &mol, MapOfActions::getInstance().getDescription("molecule-by-id"));
65 dialog->queryBoolean("id-mapping", &IdMapping, MapOfActions::getInstance().getDescription("id-mapping"));
66
67 if(dialog->display()) {
68 DoLog(1) && (Log() << Verbose(1) << "Linear interpolation between configuration " << start << " and " << end << "." << endl);
69 if (IdMapping)
70 DoLog(1) && (Log() << Verbose(1) << "Using Identity for the permutation map." << endl);
71 char outputname[MAXSTRINGSIZE];
72 strcpy(outputname, filename.c_str());
73 // TODO: LinearInterpolationBetweenConfiguration should use stream, not the filename directly! (better for unit test)
74 if (!mol->LinearInterpolationBetweenConfiguration(start, end, outputname, *(World::getInstance().getConfig()), IdMapping))
75 DoLog(2) && (Log() << Verbose(2) << "Could not store " << outputname << " files." << endl);
76 else
77 DoLog(2) && (Log() << Verbose(2) << "Steps created and " << filename << " files stored." << endl);
78 delete dialog;
79 return Action::success;
80 }
81 delete dialog;
82 return Action::failure;
83}
84
85Action::state_ptr MoleculeLinearInterpolationofTrajectoriesAction::performUndo(Action::state_ptr _state) {
86// MoleculeLinearInterpolationofTrajectoriesState *state = assert_cast<MoleculeLinearInterpolationofTrajectoriesState*>(_state.get());
87
88// string newName = state->mol->getName();
89// state->mol->setName(state->lastName);
90
91 return Action::failure;
92}
93
94Action::state_ptr MoleculeLinearInterpolationofTrajectoriesAction::performRedo(Action::state_ptr _state){
95 // Undo and redo have to do the same for this action
96 return performUndo(_state);
97}
98
99bool MoleculeLinearInterpolationofTrajectoriesAction::canUndo() {
100 return false;
101}
102
103bool MoleculeLinearInterpolationofTrajectoriesAction::shouldUndo() {
104 return false;
105}
106
107const string MoleculeLinearInterpolationofTrajectoriesAction::getName() {
108 return NAME;
109}
Note: See TracBrowser for help on using the repository browser.