Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Rev | Line | |
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[b2cfdb] | 1 | /*
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| 2 | * ManipulateAtomsProcess.cpp
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| 3 | *
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| 4 | * Created on: Feb 18, 2010
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| 5 | * Author: crueger
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| 6 | */
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| 7 |
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[112b09] | 8 | #include "Helpers/MemDebug.hpp"
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| 9 |
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[b2cfdb] | 10 | #include "ManipulateAtomsProcess.hpp"
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| 11 |
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| 12 | #include <iostream>
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| 13 |
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[6e97e5] | 14 | #include "World.hpp"
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[67e2b3] | 15 | #include "Helpers/Assert.hpp"
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[6e97e5] | 16 |
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[b2cfdb] | 17 | using namespace std;
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| 18 |
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| 19 | ManipulateAtomsProcess::ManipulateAtomsProcess(boost::function<void(atom*)> _operation, AtomDescriptor _descr,
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| 20 | std::string _name,bool _doRegister) :
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[24a5e0] | 21 | Process(0,_name,_doRegister),
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[b2cfdb] | 22 | descr(_descr),
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[24a5e0] | 23 | operation(_operation)
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[b2cfdb] | 24 | {}
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| 25 |
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| 26 | ManipulateAtomsProcess::~ManipulateAtomsProcess()
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| 27 | {}
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| 28 |
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[5b0b98] | 29 | Action::state_ptr ManipulateAtomsProcess::performCall(){
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[23b547] | 30 | World::getInstance().doManipulate(this);
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[67e2b3] | 31 | return Action::success;
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[b2cfdb] | 32 | }
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| 33 |
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[5b0b98] | 34 | Action::state_ptr ManipulateAtomsProcess::performUndo(Action::state_ptr){
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[67e2b3] | 35 | ASSERT(0,"Undo called for a ManipulateAtomsProcess");
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| 36 | return Action::success;
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| 37 | }
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[b2cfdb] | 38 |
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[5b0b98] | 39 | Action::state_ptr ManipulateAtomsProcess::performRedo(Action::state_ptr){
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[67e2b3] | 40 | ASSERT(0,"Redo called for a ManipulateAtomsProcess");
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| 41 | return Action::success;
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[b2cfdb] | 42 | }
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| 43 |
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| 44 | bool ManipulateAtomsProcess::canUndo(){
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| 45 | return false;
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| 46 | }
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[afb47f] | 47 |
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[67e2b3] | 48 | bool ManipulateAtomsProcess::shouldUndo(){
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| 49 | return true;
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| 50 | }
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| 51 |
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[afb47f] | 52 | void ManipulateAtomsProcess::doManipulate(World *world){
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| 53 | setMaxSteps(world->numAtoms());
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| 54 | start();
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[6e97e5] | 55 | for(World::AtomIterator iter=world->getAtomIter(descr);iter!=world->atomEnd();++iter){
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[afb47f] | 56 | setCurrStep(iter.getCount());
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| 57 | operation(*iter);
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| 58 | }
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| 59 | stop();
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| 60 | }
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