source: src/Actions/Makefile.am@ 22ac22a

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 22ac22a was 2fcef3, checked in by Frederik Heber <heber@…>, 10 years ago

Added SaturateAction that uses SphericalPointDistribution.

  • added saturate-atoms to userguide.
  • added regression test fpr saturate-atoms.
  • Property mode set to 100644
File size: 30.7 KB
Line 
1# PLEASE adhere to the alphabetical ordering in this Makefile!
2# Also indentation by a single tab
3
4ACTIONSSOURCE = \
5 Actions/Action.cpp \
6 Actions/ActionHistory.cpp \
7 Actions/ActionQueue.cpp \
8 Actions/ActionRegistry.cpp \
9 Actions/ActionSequence.cpp \
10 Actions/ActionStatusList.cpp \
11 Actions/ActionTrait.cpp \
12 Actions/ErrorAction.cpp \
13 Actions/MakroAction.cpp \
14 Actions/ManipulateAtomsProcess.cpp \
15 Actions/MethodAction.cpp \
16 Actions/OptionRegistry.cpp \
17 Actions/OptionTrait.cpp \
18 Actions/Process.cpp \
19 Actions/toCLIString.cpp \
20 Actions/toPythonString.cpp \
21 Actions/UndoRedoHelpers.cpp \
22 Actions/Values.cpp
23
24ACTIONSHEADER = \
25 Actions/Action.hpp \
26 Actions/ActionExceptions.hpp \
27 Actions/Action_impl_header.hpp \
28 Actions/Action_impl_pre.hpp \
29 Actions/Action_impl_undef.hpp \
30 Actions/ActionHistory.hpp \
31 Actions/ActionQueue.hpp \
32 Actions/ActionParameters.hpp \
33 Actions/ActionRegistry.hpp \
34 Actions/ActionSequence.hpp \
35 Actions/ActionState.hpp \
36 Actions/ActionStatusList.hpp \
37 Actions/ActionTrait.hpp \
38 Actions/ActionTraits.hpp \
39 Actions/AtomsCalculation.hpp \
40 Actions/AtomsCalculation_impl.hpp \
41 Actions/Calculation.hpp \
42 Actions/Calculation_impl.hpp \
43 Actions/ErrorAction.hpp \
44 Actions/GlobalListOfActions.hpp \
45 Actions/MakroAction.hpp \
46 Actions/MakroAction_impl_header.hpp \
47 Actions/MakroAction_impl_pre.hpp \
48 Actions/ManipulateAtomsProcess.hpp \
49 Actions/MethodAction.hpp \
50 Actions/OptionRegistry.hpp \
51 Actions/OptionTrait.hpp \
52 Actions/Process.hpp \
53 Actions/toCLIString.hpp \
54 Actions/toPythonString.hpp \
55 Actions/UndoRedoHelpers.hpp \
56 Actions/Values.hpp
57
58ACTIONPROTOTYPESSOURCE = \
59 ${ANALYSISACTIONSOURCE} \
60 ${ATOMACTIONSOURCE} \
61 ${BONDACTIONSOURCE} \
62 ${CMDACTIONSOURCE} \
63 ${FILLACTIONSOURCE} \
64 ${FRAGMENTATIONACTIONSOURCE} \
65 ${GRAPHACTIONSOURCE} \
66 ${MOLECULEACTIONSOURCE} \
67 ${PARSERACTIONSOURCE} \
68 ${POTENTIALACTIONSOURCE} \
69 ${RANDONNUMBERSSOURCE} \
70 ${SELECTIONATOMACTIONSOURCE} \
71 ${SELECTIONMOLECULEACTIONSOURCE} \
72 ${SELECTIONSHAPEACTIONSOURCE} \
73 ${SHAPEACTIONSOURCE} \
74 ${TESSELATIONACTIONSOURCE} \
75 $(UNDOACTIONSOURCE) \
76 ${WORLDACTIONSOURCE}
77
78ACTIONPROTOTYPESHEADER = \
79 ${ANALYSISACTIONHEADER} \
80 ${ATOMACTIONHEADER} \
81 ${BONDACTIONHEADER} \
82 ${CMDACTIONHEADER} \
83 ${FILLACTIONHEADER} \
84 ${FRAGMENTATIONACTIONHEADER} \
85 ${GRAPHACTIONHEADER} \
86 ${MOLECULEACTIONHEADER} \
87 ${PARSERACTIONHEADER} \
88 ${POTENTIALACTIONHEADER} \
89 ${RANDONNUMBERSHEADER} \
90 ${SELECTIONATOMACTIONHEADER} \
91 ${SELECTIONMOLECULEACTIONHEADER} \
92 ${SELECTIONSHAPEACTIONHEADER} \
93 ${SHAPEACTIONHEADER} \
94 ${TESSELATIONACTIONHEADER} \
95 $(UNDOACTIONHEADER) \
96 ${WORLDACTIONHEADER}
97
98ACTIONPROTOTYPESDEFS = \
99 ${ANALYSISACTIONDEFS} \
100 ${ATOMACTIONDEFS} \
101 ${BONDACTIONDEFS} \
102 ${CMDACTIONDEFS} \
103 ${FILLACTIONDEFS} \
104 ${FRAGMENTATIONACTIONDEFS} \
105 ${GRAPHACTIONDEFS} \
106 ${MOLECULEACTIONDEFS} \
107 ${PARSERACTIONDEFS} \
108 ${POTENTIALACTIONDEFS} \
109 ${RANDONNUMBERSDEFS} \
110 ${SELECTIONATOMACTIONDEFS} \
111 ${SELECTIONMOLECULEACTIONDEFS} \
112 ${SELECTIONSHAPEACTIONDEFS} \
113 ${SHAPEACTIONDEFS} \
114 ${TESSELATIONACTIONDEFS} \
115 $(UNDOACTIONDEFS) \
116 ${WORLDACTIONDEFS}
117
118ANALYSISACTIONSOURCE = \
119 Actions/AnalysisAction/AverageMoleculeForceAction.cpp \
120 Actions/AnalysisAction/DipoleAngularCorrelationAction.cpp \
121 Actions/AnalysisAction/DipoleCorrelationAction.cpp \
122 Actions/AnalysisAction/MolecularVolumeAction.cpp \
123 Actions/AnalysisAction/PairCorrelationAction.cpp \
124 Actions/AnalysisAction/PointCorrelationAction.cpp \
125 Actions/AnalysisAction/PrincipalAxisSystemAction.cpp \
126 Actions/AnalysisAction/SurfaceCorrelationAction.cpp
127ANALYSISACTIONHEADER = \
128 Actions/AnalysisAction/AverageMoleculeForceAction.hpp \
129 Actions/AnalysisAction/DipoleAngularCorrelationAction.hpp \
130 Actions/AnalysisAction/DipoleCorrelationAction.hpp \
131 Actions/AnalysisAction/MolecularVolumeAction.hpp \
132 Actions/AnalysisAction/PairCorrelationAction.hpp \
133 Actions/AnalysisAction/PointCorrelationAction.hpp \
134 Actions/AnalysisAction/PrincipalAxisSystemAction.hpp \
135 Actions/AnalysisAction/SurfaceCorrelationAction.hpp
136ANALYSISACTIONDEFS = \
137 Actions/AnalysisAction/AverageMoleculeForceAction.def \
138 Actions/AnalysisAction/DipoleAngularCorrelationAction.def \
139 Actions/AnalysisAction/DipoleCorrelationAction.def \
140 Actions/AnalysisAction/MolecularVolumeAction.def \
141 Actions/AnalysisAction/PairCorrelationAction.def \
142 Actions/AnalysisAction/PointCorrelationAction.def \
143 Actions/AnalysisAction/PrincipalAxisSystemAction.def \
144 Actions/AnalysisAction/SurfaceCorrelationAction.def
145
146ATOMACTIONSOURCE = \
147 Actions/AtomAction/AddAction.cpp \
148 Actions/AtomAction/ChangeElementAction.cpp \
149 Actions/AtomAction/MirrorAction.cpp \
150 Actions/AtomAction/RemoveAction.cpp \
151 Actions/AtomAction/RotateAroundOriginByAngleAction.cpp \
152 Actions/AtomAction/SaturateAction.cpp \
153 Actions/AtomAction/SaveSelectedAtomsAction.cpp \
154 Actions/AtomAction/TranslateAction.cpp \
155 Actions/AtomAction/TranslateToOriginAction.cpp
156ATOMACTIONHEADER = \
157 Actions/AtomAction/AddAction.hpp \
158 Actions/AtomAction/ChangeElementAction.hpp \
159 Actions/AtomAction/MirrorAction.hpp \
160 Actions/AtomAction/RemoveAction.hpp \
161 Actions/AtomAction/RotateAroundOriginByAngleAction.hpp \
162 Actions/AtomAction/SaturateAction.hpp \
163 Actions/AtomAction/SaveSelectedAtomsAction.hpp \
164 Actions/AtomAction/TranslateAction.hpp \
165 Actions/AtomAction/TranslateToOriginAction.hpp
166ATOMACTIONDEFS = \
167 Actions/AtomAction/AddAction.def \
168 Actions/AtomAction/ChangeElementAction.def \
169 Actions/AtomAction/MirrorAction.def \
170 Actions/AtomAction/RemoveAction.def \
171 Actions/AtomAction/RotateAroundOriginByAngleAction.def \
172 Actions/AtomAction/SaturateAction.def \
173 Actions/AtomAction/SaveSelectedAtomsAction.def \
174 Actions/AtomAction/TranslateAction.def \
175 Actions/AtomAction/TranslateToOriginAction.def
176
177BONDACTIONSOURCE = \
178 Actions/BondAction/BondAddAction.cpp \
179 Actions/BondAction/BondRemoveAction.cpp
180BONDACTIONHEADER = \
181 Actions/BondAction/BondAddAction.hpp \
182 Actions/BondAction/BondRemoveAction.hpp
183BONDACTIONDEFS = \
184 Actions/BondAction/BondAddAction.def \
185 Actions/BondAction/BondRemoveAction.def
186
187CMDACTIONSOURCE = \
188 Actions/CommandAction/BondLengthTableAction.cpp \
189 Actions/CommandAction/ElementDbAction.cpp \
190 Actions/CommandAction/FastParsingAction.cpp \
191 Actions/CommandAction/HelpAction.cpp \
192 Actions/CommandAction/HelpRedistributeAction.cpp \
193 Actions/CommandAction/StoreSessionAction.cpp \
194 Actions/CommandAction/VerboseAction.cpp \
195 Actions/CommandAction/VersionAction.cpp \
196 Actions/CommandAction/WarrantyAction.cpp
197CMDACTIONHEADER = \
198 Actions/CommandAction/BondLengthTableAction.hpp \
199 Actions/CommandAction/ElementDbAction.hpp \
200 Actions/CommandAction/FastParsingAction.hpp \
201 Actions/CommandAction/HelpAction.hpp \
202 Actions/CommandAction/HelpRedistributeAction.hpp \
203 Actions/CommandAction/StoreSessionAction.hpp \
204 Actions/CommandAction/VerboseAction.hpp \
205 Actions/CommandAction/VersionAction.hpp \
206 Actions/CommandAction/WarrantyAction.hpp
207CMDACTIONDEFS = \
208 Actions/CommandAction/BondLengthTableAction.def \
209 Actions/CommandAction/ElementDbAction.def \
210 Actions/CommandAction/FastParsingAction.def \
211 Actions/CommandAction/HelpAction.def \
212 Actions/CommandAction/HelpRedistributeAction.def \
213 Actions/CommandAction/StoreSessionAction.def \
214 Actions/CommandAction/VerboseAction.def \
215 Actions/CommandAction/VersionAction.def \
216 Actions/CommandAction/WarrantyAction.def
217
218if CONDPYTHON
219CMDACTIONSOURCE += \
220 Actions/CommandAction/LoadSessionAction.cpp
221CMDACTIONHEADER += \
222 Actions/CommandAction/LoadSessionAction.hpp
223CMDACTIONDEFS += \
224 Actions/CommandAction/LoadSessionAction.def
225endif
226
227FILLACTIONSOURCE = \
228 Actions/FillAction/FillRegularGridAction.cpp \
229 Actions/FillAction/FillSurfaceAction.cpp \
230 Actions/FillAction/SuspendInMoleculeAction.cpp \
231 Actions/FillAction/FillVolumeAction.cpp
232FILLACTIONHEADER = \
233 Actions/FillAction/FillRegularGridAction.hpp \
234 Actions/FillAction/FillSurfaceAction.hpp \
235 Actions/FillAction/SuspendInMoleculeAction.hpp \
236 Actions/FillAction/FillVolumeAction.hpp
237FILLACTIONDEFS = \
238 Actions/FillAction/FillRegularGridAction.def \
239 Actions/FillAction/FillSurfaceAction.def \
240 Actions/FillAction/SuspendInMoleculeAction.def \
241 Actions/FillAction/FillVolumeAction.def
242
243
244FRAGMENTATIONACTIONSOURCE = \
245 Actions/FragmentationAction/AnalyseFragmentationResultsAction.cpp \
246 Actions/FragmentationAction/ClearFragmentationResultsAction.cpp \
247 Actions/FragmentationAction/FragmentationAction.cpp \
248 Actions/FragmentationAction/FragmentationAutomationAction.cpp \
249 Actions/FragmentationAction/MolecularDynamicsAction.cpp \
250 Actions/FragmentationAction/ParseFragmentJobsAction.cpp \
251 Actions/FragmentationAction/StoreSaturatedFragmentAction.cpp \
252 Actions/FragmentationAction/StructuralOptimizationAction.cpp
253FRAGMENTATIONACTIONHEADER = \
254 Actions/FragmentationAction/AnalyseFragmentationResultsAction.hpp \
255 Actions/FragmentationAction/ClearFragmentationResultsAction.hpp \
256 Actions/FragmentationAction/FragmentationAction.hpp \
257 Actions/FragmentationAction/FragmentationAutomationAction.hpp \
258 Actions/FragmentationAction/MolecularDynamicsAction.hpp \
259 Actions/FragmentationAction/ParseFragmentJobsAction.hpp \
260 Actions/FragmentationAction/StoreSaturatedFragmentAction.hpp \
261 Actions/FragmentationAction/StructuralOptimizationAction.hpp
262FRAGMENTATIONACTIONDEFS = \
263 Actions/FragmentationAction/AnalyseFragmentationResultsAction.def \
264 Actions/FragmentationAction/ClearFragmentationResultsAction.def \
265 Actions/FragmentationAction/FragmentationAction.def \
266 Actions/FragmentationAction/FragmentationAutomationAction.def \
267 Actions/FragmentationAction/MolecularDynamicsAction.def \
268 Actions/FragmentationAction/ParseFragmentJobsAction.def \
269 Actions/FragmentationAction/StoreSaturatedFragmentAction.def \
270 Actions/FragmentationAction/StructuralOptimizationAction.def
271
272GRAPHACTIONSOURCE = \
273 Actions/GraphAction/CorrectBondDegreeAction.cpp \
274 Actions/GraphAction/CreateAdjacencyAction.cpp \
275 Actions/GraphAction/DepthFirstSearchAction.cpp \
276 Actions/GraphAction/DestroyAdjacencyAction.cpp \
277 Actions/GraphAction/SubgraphDissectionAction.cpp \
278 Actions/GraphAction/UpdateMoleculesAction.cpp
279GRAPHACTIONHEADER = \
280 Actions/GraphAction/CorrectBondDegreeAction.hpp \
281 Actions/GraphAction/CreateAdjacencyAction.hpp \
282 Actions/GraphAction/DepthFirstSearchAction.hpp \
283 Actions/GraphAction/DestroyAdjacencyAction.hpp \
284 Actions/GraphAction/SubgraphDissectionAction.hpp \
285 Actions/GraphAction/UpdateMoleculesAction.hpp
286GRAPHACTIONDEFS = \
287 Actions/GraphAction/CorrectBondDegreeAction.def \
288 Actions/GraphAction/CreateAdjacencyAction.def \
289 Actions/GraphAction/DepthFirstSearchAction.def \
290 Actions/GraphAction/DestroyAdjacencyAction.def \
291 Actions/GraphAction/SubgraphDissectionAction.def \
292 Actions/GraphAction/UpdateMoleculesAction.def
293
294MOLECULEACTIONSOURCE = \
295 Actions/MoleculeAction/BondFileAction.cpp \
296 Actions/MoleculeAction/ChangeBondAngleAction.cpp \
297 Actions/MoleculeAction/ChangeNameAction.cpp \
298 Actions/MoleculeAction/CopyAction.cpp \
299 Actions/MoleculeAction/ForceAnnealingAction.cpp \
300 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp \
301 Actions/MoleculeAction/LoadAction.cpp \
302 Actions/MoleculeAction/RemoveAction.cpp \
303 Actions/MoleculeAction/RotateAroundSelfByAngleAction.cpp \
304 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp \
305 Actions/MoleculeAction/SaveSelectedMoleculesAction.cpp \
306 Actions/MoleculeAction/SaveAdjacencyAction.cpp \
307 Actions/MoleculeAction/SaveBondsAction.cpp \
308 Actions/MoleculeAction/SaveTemperatureAction.cpp \
309 Actions/MoleculeAction/StretchBondAction.cpp \
310 Actions/MoleculeAction/TranslateAction.cpp \
311 Actions/MoleculeAction/VerletIntegrationAction.cpp
312MOLECULEACTIONHEADER = \
313 Actions/MoleculeAction/BondFileAction.hpp \
314 Actions/MoleculeAction/ChangeBondAngleAction.hpp \
315 Actions/MoleculeAction/ChangeNameAction.hpp \
316 Actions/MoleculeAction/CopyAction.hpp \
317 Actions/MoleculeAction/ForceAnnealingAction.hpp \
318 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp \
319 Actions/MoleculeAction/LoadAction.hpp \
320 Actions/MoleculeAction/RemoveAction.hpp \
321 Actions/MoleculeAction/RotateAroundSelfByAngleAction.hpp \
322 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.hpp \
323 Actions/MoleculeAction/SaveSelectedMoleculesAction.hpp \
324 Actions/MoleculeAction/SaveAdjacencyAction.hpp \
325 Actions/MoleculeAction/SaveBondsAction.hpp \
326 Actions/MoleculeAction/SaveTemperatureAction.hpp \
327 Actions/MoleculeAction/StretchBondAction.hpp \
328 Actions/MoleculeAction/TranslateAction.hpp \
329 Actions/MoleculeAction/VerletIntegrationAction.hpp
330MOLECULEACTIONDEFS = \
331 Actions/MoleculeAction/BondFileAction.def \
332 Actions/MoleculeAction/ChangeBondAngleAction.def \
333 Actions/MoleculeAction/ChangeNameAction.def \
334 Actions/MoleculeAction/CopyAction.def \
335 Actions/MoleculeAction/ForceAnnealingAction.def \
336 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.def \
337 Actions/MoleculeAction/LoadAction.def \
338 Actions/MoleculeAction/RemoveAction.def \
339 Actions/MoleculeAction/RotateAroundSelfByAngleAction.def \
340 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.def \
341 Actions/MoleculeAction/SaveSelectedMoleculesAction.def \
342 Actions/MoleculeAction/SaveAdjacencyAction.def \
343 Actions/MoleculeAction/SaveBondsAction.def \
344 Actions/MoleculeAction/SaveTemperatureAction.def \
345 Actions/MoleculeAction/StretchBondAction.def \
346 Actions/MoleculeAction/TranslateAction.def \
347 Actions/MoleculeAction/VerletIntegrationAction.def
348
349PARSERACTIONSOURCE = \
350 Actions/ParserAction/ParseTremoloPotentialsAction.cpp \
351 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.cpp \
352 Actions/ParserAction/SetParserParametersAction.cpp \
353 Actions/ParserAction/SetOutputFormatsAction.cpp \
354 Actions/ParserAction/SetTremoloAtomdataAction.cpp
355PARSERACTIONHEADER = \
356 Actions/ParserAction/ParseTremoloPotentialsAction.hpp \
357 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.hpp \
358 Actions/ParserAction/SetParserParametersAction.hpp \
359 Actions/ParserAction/SetOutputFormatsAction.hpp \
360 Actions/ParserAction/SetTremoloAtomdataAction.hpp
361PARSERACTIONDEFS = \
362 Actions/ParserAction/ParseTremoloPotentialsAction.def \
363 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.def \
364 Actions/ParserAction/SetParserParametersAction.def \
365 Actions/ParserAction/SetOutputFormatsAction.def \
366 Actions/ParserAction/SetTremoloAtomdataAction.def
367
368POTENTIALACTIONSOURCE = \
369 Actions/PotentialAction/FitParticleChargesAction.cpp \
370 Actions/PotentialAction/ParseHomologiesAction.cpp \
371 Actions/PotentialAction/ParsePotentialsAction.cpp \
372 Actions/PotentialAction/SaveHomologiesAction.cpp \
373 Actions/PotentialAction/SavePotentialsAction.cpp
374POTENTIALACTIONHEADER = \
375 Actions/PotentialAction/FitParticleChargesAction.hpp \
376 Actions/PotentialAction/ParseHomologiesAction.hpp \
377 Actions/PotentialAction/ParsePotentialsAction.hpp \
378 Actions/PotentialAction/SaveHomologiesAction.hpp \
379 Actions/PotentialAction/SavePotentialsAction.hpp
380POTENTIALACTIONDEFS = \
381 Actions/PotentialAction/FitParticleChargesAction.def \
382 Actions/PotentialAction/ParseHomologiesAction.def \
383 Actions/PotentialAction/ParsePotentialsAction.def \
384 Actions/PotentialAction/SaveHomologiesAction.def \
385 Actions/PotentialAction/SavePotentialsAction.def
386
387if CONDLEVMAR
388POTENTIALACTIONSOURCE += \
389 Actions/PotentialAction/FitCompoundPotentialAction.cpp \
390 Actions/PotentialAction/FitPotentialAction.cpp
391POTENTIALACTIONHEADER += \
392 Actions/PotentialAction/FitCompoundPotentialAction.hpp \
393 Actions/PotentialAction/FitPotentialAction.hpp
394POTENTIALACTIONDEFS += \
395 Actions/PotentialAction/FitCompoundPotentialAction.def \
396 Actions/PotentialAction/FitPotentialAction.def
397endif
398
399RANDONNUMBERSSOURCE =\
400 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.cpp \
401 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.cpp
402RANDONNUMBERSHEADER =\
403 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.hpp \
404 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.hpp
405RANDONNUMBERSDEFS =\
406 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.def \
407 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.def
408
409SELECTIONATOMACTIONSOURCE = \
410 Actions/SelectionAction/Atoms/AllAtomsAction.cpp \
411 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.cpp \
412 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.cpp \
413 Actions/SelectionAction/Atoms/AtomByElementAction.cpp \
414 Actions/SelectionAction/Atoms/AtomByIdAction.cpp \
415 Actions/SelectionAction/Atoms/AtomByOrderAction.cpp \
416 Actions/SelectionAction/Atoms/ClearAllAtomsAction.cpp \
417 Actions/SelectionAction/Atoms/InvertAtomsAction.cpp \
418 Actions/SelectionAction/Atoms/NotAllAtomsAction.cpp \
419 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.cpp \
420 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.cpp \
421 Actions/SelectionAction/Atoms/NotAtomByElementAction.cpp \
422 Actions/SelectionAction/Atoms/NotAtomByIdAction.cpp \
423 Actions/SelectionAction/Atoms/NotAtomByOrderAction.cpp \
424 Actions/SelectionAction/Atoms/PopAtomsAction.cpp \
425 Actions/SelectionAction/Atoms/PushAtomsAction.cpp
426SELECTIONATOMACTIONHEADER = \
427 Actions/SelectionAction/Atoms/AllAtomsAction.hpp \
428 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.hpp \
429 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.hpp \
430 Actions/SelectionAction/Atoms/AtomByElementAction.hpp \
431 Actions/SelectionAction/Atoms/AtomByIdAction.hpp \
432 Actions/SelectionAction/Atoms/AtomByOrderAction.hpp \
433 Actions/SelectionAction/Atoms/ClearAllAtomsAction.hpp \
434 Actions/SelectionAction/Atoms/InvertAtomsAction.hpp \
435 Actions/SelectionAction/Atoms/NotAllAtomsAction.hpp \
436 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.hpp \
437 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.hpp \
438 Actions/SelectionAction/Atoms/NotAtomByElementAction.hpp \
439 Actions/SelectionAction/Atoms/NotAtomByIdAction.hpp \
440 Actions/SelectionAction/Atoms/NotAtomByOrderAction.hpp \
441 Actions/SelectionAction/Atoms/PopAtomsAction.hpp \
442 Actions/SelectionAction/Atoms/PushAtomsAction.hpp
443SELECTIONATOMACTIONDEFS = \
444 Actions/SelectionAction/Atoms/AllAtomsAction.def \
445 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.def \
446 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.def \
447 Actions/SelectionAction/Atoms/AtomByElementAction.def \
448 Actions/SelectionAction/Atoms/AtomByIdAction.def \
449 Actions/SelectionAction/Atoms/AtomByOrderAction.def \
450 Actions/SelectionAction/Atoms/ClearAllAtomsAction.def \
451 Actions/SelectionAction/Atoms/InvertAtomsAction.def \
452 Actions/SelectionAction/Atoms/NotAllAtomsAction.def \
453 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.def \
454 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.def \
455 Actions/SelectionAction/Atoms/NotAtomByElementAction.def \
456 Actions/SelectionAction/Atoms/NotAtomByIdAction.def \
457 Actions/SelectionAction/Atoms/NotAtomByOrderAction.def \
458 Actions/SelectionAction/Atoms/PopAtomsAction.def \
459 Actions/SelectionAction/Atoms/PushAtomsAction.def
460
461SELECTIONMOLECULEACTIONSOURCE = \
462 Actions/SelectionAction/Molecules/AllMoleculesAction.cpp \
463 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.cpp \
464 Actions/SelectionAction/Molecules/InvertMoleculesAction.cpp \
465 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.cpp \
466 Actions/SelectionAction/Molecules/MoleculeByIdAction.cpp \
467 Actions/SelectionAction/Molecules/MoleculeByNameAction.cpp \
468 Actions/SelectionAction/Molecules/MoleculeByOrderAction.cpp \
469 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.cpp \
470 Actions/SelectionAction/Molecules/NotAllMoleculesAction.cpp \
471 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.cpp \
472 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.cpp \
473 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.cpp \
474 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.cpp \
475 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.cpp \
476 Actions/SelectionAction/Molecules/PopMoleculesAction.cpp \
477 Actions/SelectionAction/Molecules/PushMoleculesAction.cpp
478SELECTIONMOLECULEACTIONHEADER = \
479 Actions/SelectionAction/Molecules/AllMoleculesAction.hpp \
480 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.hpp \
481 Actions/SelectionAction/Molecules/InvertMoleculesAction.hpp \
482 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.hpp \
483 Actions/SelectionAction/Molecules/MoleculeByIdAction.hpp \
484 Actions/SelectionAction/Molecules/MoleculeByNameAction.hpp \
485 Actions/SelectionAction/Molecules/MoleculeByOrderAction.hpp \
486 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.hpp \
487 Actions/SelectionAction/Molecules/NotAllMoleculesAction.hpp \
488 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.hpp \
489 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.hpp \
490 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.hpp \
491 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.hpp \
492 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.hpp \
493 Actions/SelectionAction/Molecules/PopMoleculesAction.hpp \
494 Actions/SelectionAction/Molecules/PushMoleculesAction.hpp
495SELECTIONMOLECULEACTIONDEFS = \
496 Actions/SelectionAction/Molecules/AllMoleculesAction.def \
497 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.def \
498 Actions/SelectionAction/Molecules/InvertMoleculesAction.def \
499 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.def \
500 Actions/SelectionAction/Molecules/MoleculeByIdAction.def \
501 Actions/SelectionAction/Molecules/MoleculeByNameAction.def \
502 Actions/SelectionAction/Molecules/MoleculeByOrderAction.def \
503 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.def \
504 Actions/SelectionAction/Molecules/NotAllMoleculesAction.def \
505 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.def \
506 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.def \
507 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.def \
508 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.def \
509 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.def \
510 Actions/SelectionAction/Molecules/PopMoleculesAction.def \
511 Actions/SelectionAction/Molecules/PushMoleculesAction.def
512
513SELECTIONSHAPEACTIONSOURCE = \
514 Actions/SelectionAction/Shapes/AllShapesAction.cpp \
515 Actions/SelectionAction/Shapes/ShapeByNameAction.cpp \
516 Actions/SelectionAction/Shapes/NotAllShapesAction.cpp \
517 Actions/SelectionAction/Shapes/NotShapeByNameAction.cpp
518SELECTIONSHAPEACTIONHEADER = \
519 Actions/SelectionAction/Shapes/AllShapesAction.hpp \
520 Actions/SelectionAction/Shapes/ShapeByNameAction.hpp \
521 Actions/SelectionAction/Shapes/NotAllShapesAction.hpp \
522 Actions/SelectionAction/Shapes/NotShapeByNameAction.hpp
523SELECTIONSHAPEACTIONDEFS = \
524 Actions/SelectionAction/Shapes/AllShapesAction.def \
525 Actions/SelectionAction/Shapes/ShapeByNameAction.def \
526 Actions/SelectionAction/Shapes/NotAllShapesAction.def \
527 Actions/SelectionAction/Shapes/NotShapeByNameAction.def
528
529SHAPEACTIONSOURCE = \
530 Actions/ShapeAction/CombineShapesAction.cpp \
531 Actions/ShapeAction/CreateShapeAction.cpp \
532 Actions/ShapeAction/RemoveShapeAction.cpp \
533 Actions/ShapeAction/RotateShapeAction.cpp \
534 Actions/ShapeAction/StretchShapeAction.cpp \
535 Actions/ShapeAction/TranslateShapeAction.cpp
536SHAPEACTIONHEADER = \
537 Actions/ShapeAction/CombineShapesAction.hpp \
538 Actions/ShapeAction/CreateShapeAction.hpp \
539 Actions/ShapeAction/RemoveShapeAction.hpp \
540 Actions/ShapeAction/RotateShapeAction.hpp \
541 Actions/ShapeAction/StretchShapeAction.hpp \
542 Actions/ShapeAction/TranslateShapeAction.hpp
543SHAPEACTIONDEFS = \
544 Actions/ShapeAction/CombineShapesAction.def \
545 Actions/ShapeAction/CreateShapeAction.def \
546 Actions/ShapeAction/RemoveShapeAction.def \
547 Actions/ShapeAction/RotateShapeAction.def \
548 Actions/ShapeAction/StretchShapeAction.def \
549 Actions/ShapeAction/TranslateShapeAction.def
550
551TESSELATIONACTIONSOURCE = \
552 Actions/TesselationAction/ConvexEnvelopeAction.cpp \
553 Actions/TesselationAction/NonConvexEnvelopeAction.cpp
554TESSELATIONACTIONHEADER = \
555 Actions/TesselationAction/ConvexEnvelopeAction.hpp \
556 Actions/TesselationAction/NonConvexEnvelopeAction.hpp
557TESSELATIONACTIONDEFS = \
558 Actions/TesselationAction/ConvexEnvelopeAction.def \
559 Actions/TesselationAction/NonConvexEnvelopeAction.def
560
561UNDOACTIONSOURCE = \
562 Actions/RedoAction.cpp \
563 Actions/UndoAction.cpp
564UNDOACTIONHEADER = \
565 Actions/RedoAction.hpp \
566 Actions/UndoAction.hpp
567UNDOACTIONDEFS = \
568 Actions/RedoAction.def \
569 Actions/UndoAction.def
570
571
572WORLDACTIONSOURCE = \
573 Actions/WorldAction/AddEmptyBoundaryAction.cpp \
574 Actions/WorldAction/BoundInBoxAction.cpp \
575 Actions/WorldAction/CenterInBoxAction.cpp \
576 Actions/WorldAction/CenterOnEdgeAction.cpp \
577 Actions/WorldAction/ChangeBoxAction.cpp \
578 Actions/WorldAction/InputAction.cpp \
579 Actions/WorldAction/OutputAction.cpp \
580 Actions/WorldAction/OutputAsAction.cpp \
581 Actions/WorldAction/RepeatBoxAction.cpp \
582 Actions/WorldAction/ScaleBoxAction.cpp \
583 Actions/WorldAction/SetBoundaryConditionsAction.cpp \
584 Actions/WorldAction/SetDefaultNameAction.cpp \
585 Actions/WorldAction/SetWorldTimeAction.cpp
586WORLDACTIONHEADER = \
587 Actions/WorldAction/AddEmptyBoundaryAction.hpp \
588 Actions/WorldAction/BoundInBoxAction.hpp \
589 Actions/WorldAction/CenterInBoxAction.hpp \
590 Actions/WorldAction/CenterOnEdgeAction.hpp \
591 Actions/WorldAction/ChangeBoxAction.hpp \
592 Actions/WorldAction/InputAction.hpp \
593 Actions/WorldAction/OutputAction.hpp \
594 Actions/WorldAction/OutputAsAction.hpp \
595 Actions/WorldAction/RepeatBoxAction.hpp \
596 Actions/WorldAction/ScaleBoxAction.hpp \
597 Actions/WorldAction/SetBoundaryConditionsAction.hpp \
598 Actions/WorldAction/SetDefaultNameAction.hpp \
599 Actions/WorldAction/SetWorldTimeAction.hpp
600WORLDACTIONDEFS = \
601 Actions/WorldAction/AddEmptyBoundaryAction.def \
602 Actions/WorldAction/BoundInBoxAction.def \
603 Actions/WorldAction/CenterInBoxAction.def \
604 Actions/WorldAction/CenterOnEdgeAction.def \
605 Actions/WorldAction/ChangeBoxAction.def \
606 Actions/WorldAction/InputAction.def \
607 Actions/WorldAction/OutputAction.def \
608 Actions/WorldAction/OutputAsAction.def \
609 Actions/WorldAction/RepeatBoxAction.def \
610 Actions/WorldAction/ScaleBoxAction.def \
611 Actions/WorldAction/SetBoundaryConditionsAction.def \
612 Actions/WorldAction/SetDefaultNameAction.def \
613 Actions/WorldAction/SetWorldTimeAction.def
614
615#ACTIONPYTHONSOURCE_WITHDIR = $(ACTIONPROTOTYPESSOURCE:Action.cpp=Action.python.cpp)
616#ACTIONPYTHONSOURCE = $(notdir $(ACTIONPYTHONSOURCE_WITHDIR))
617
618noinst_LTLIBRARIES += \
619 libMolecuilderActions.la \
620 libMolecuilderActionPrototypes.la
621# libMolecuilderActionPython.la
622libMolecuilderActionPrototypes_la_CPPFLAGS = $(AM_CPPFLAGS)
623if CONDJOBMARKET
624libMolecuilderActionPrototypes_la_CPPFLAGS += $(JobMarket_CFLAGS)
625endif
626if CONDLEVMAR
627libMolecuilderActionPrototypes_la_CPPFLAGS += $(LEVMAR_CPPFLAGS)
628endif
629libMolecuilderActions_la_includedir = $(includedir)/MoleCuilder/
630libMolecuilderActionPrototypes_la_includedir = $(includedir)/MoleCuilder/
631#libMolecuilderActionPython_la_includedir = $(includedir)/MoleCuilder/
632
633BUILT_SOURCES += AllActionHeaders.hpp
634if CONDPYTHON
635BUILT_SOURCES += AllActionPython.hpp
636endif
637#$(ACTIONPYTHONSOURCE)
638
639# UIElements/libMolecuilderUI.la
640nobase_libMolecuilderActions_la_include_HEADERS = ${ACTIONSHEADER}
641nobase_libMolecuilderActionPrototypes_la_include_HEADERS = ${ACTIONPROTOTYPESHEADER} ${ACTIONPROTOTYPESDEFS}
642nodist_libMolecuilderActionPrototypes_la_include_HEADERS = AllActionHeaders.hpp
643#nobase_libMolecuilderActionPython_la_include_HEADERS = ${ACTIONPROTOTYPESHEADER} ${ACTIONPROTOTYPESDEFS}
644#nodist_libMolecuilderActionPython_la_include_HEADERS = AllActionHeaders.hpp
645
646## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
647## target. Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
648## will therefore be treated as if it were literally part of the target name,
649## and the variable name derived from that.
650## The file extension .cc is recognized by Automake, and makes it produce
651## rules which invoke the C++ compiler to produce a libtool object file (.lo)
652## from each source file. Note that it is not necessary to list header files
653## which are already listed elsewhere in a _HEADERS variable assignment.
654libMolecuilderActions_la_SOURCES = ${ACTIONSSOURCE}
655libMolecuilderActionPrototypes_la_SOURCES = ${ACTIONPROTOTYPESSOURCE}
656#libMolecuilderActionPython_la_SOURCES = ${ACTIONPYTHONSOURCE}
657
658## Instruct libtool to include ABI version information in the generated shared
659## library file (.so). The library ABI version is defined in configure.ac, so
660## that all version information is kept in one place.
661#libMolecuilderActions_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
662
663## The generated configuration header is installed in its own subdirectory of
664## $(libdir). The reason for this is that the configuration information put
665## into this header file describes the target platform the installed library
666## has been built for. Thus the file must not be installed into a location
667## intended for architecture-independent files, as defined by the Filesystem
668## Hierarchy Standard (FHS).
669## The nodist_ prefix instructs Automake to not generate rules for including
670## the listed files in the distribution on 'make dist'. Files that are listed
671## in _HEADERS variables are normally included in the distribution, but the
672## configuration header file is generated at configure time and should not be
673## shipped with the source tarball.
674#libMolecuilderActions_libincludedir = $(libdir)/MoleCuilder/include
675#nodist_libMolecuilderActions_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
676
677## Install the generated pkg-config file (.pc) into the expected location for
678## architecture-dependent package configuration information. Occasionally,
679## pkg-config files are also used for architecture-independent data packages,
680## in which case the correct install location would be $(datadir)/pkgconfig.
681#pkgconfigdir = $(libdir)/pkgconfig
682#pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
683
684#SUFFIXES = .pytho n.cpp
685#.python.cpp: $*.def
686# echo "#include \"$<\"" >$@; \
687# echo "#include \"Actions/Action_impl_python.hpp\"" >>$@; \
688# echo "#include \"Actions/Action_impl_undef.hpp\"" >>$@;
689
690AllActionHeaders.hpp: $(ACTIONPROTOTYPESHEADER) Actions/GlobalListOfActions.hpp
691 echo "#ifndef ALLACTIONHEADERS_HPP_" >$@; \
692 echo "#define ALLACTIONHEADERS_HPP_" >>$@; \
693 for file in $(ACTIONPROTOTYPESHEADER); do \
694 echo "#include \"$$file\"" >>$@; \
695 done; \
696 echo "#endif /* ALLACTIONHEADERS_HPP_ */" >>$@;
697
698MOSTLYCLEANFILES += \
699 AllActionHeaders.hpp
700
701if CONDPYTHON
702AllActionPython.hpp: $(ACTIONPROTOTYPESHEADER) Actions/GlobalListOfActions.hpp
703 echo "#ifndef ALLACTIONPYTHON_HPP_" >$@; \
704 echo "#define ALLACTIONPYTHON_HPP_" >>$@; \
705 for file in $(ACTIONPROTOTYPESHEADER); do \
706 if test "$$file" != "Actions/CommandAction/LoadSessionAction.hpp"; then \
707 echo "#include \"`echo $$file | sed -e 's/hpp/def/'`\"" >>$@; \
708 echo "#include \"Actions/Action_impl_python.hpp\"" >>$@; \
709 echo "#include \"Actions/Action_impl_undef.hpp\"" >>$@; \
710 fi; \
711 done; \
712 echo "#endif /* ALLACTIONPYTHON_HPP_ */" >>$@;
713
714MOSTLYCLEANFILES += \
715 AllActionPython.hpp
716
717endif
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