source: src/Actions/AtomAction/ChangeElementAction.cpp@ 9e4655

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 9e4655 was b5b01e, checked in by Frederik Heber <heber@…>, 11 years ago

ActionState extracted into own header file, rename Action::state_ptr -> ActionState::ptr.

  • Property mode set to 100644
File size: 3.9 KB
RevLine 
[bcf653]1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
[0aa122]4 * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
[94d5ac6]5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
[bcf653]21 */
22
[97ebf8]23/*
24 * ChangeElementAction.cpp
25 *
26 * Created on: May 9, 2010
27 * Author: heber
28 */
29
[bf3817]30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
[ad011c]35#include "CodePatterns/MemDebug.hpp"
[112b09]36
[f8456c]37#include "Descriptors/AtomIdDescriptor.hpp"
[6f0841]38#include "Atom/atom.hpp"
[3bdb6d]39#include "Element/element.hpp"
[ad011c]40#include "CodePatterns/Log.hpp"
[57f243]41#include "LinearAlgebra/Vector.hpp"
[ad011c]42#include "CodePatterns/Verbose.hpp"
[dddbfe]43#include "molecule.hpp"
[97ebf8]44#include "World.hpp"
45
46#include <iostream>
[f8456c]47#include <map>
[97ebf8]48#include <string>
49
[1fd675]50#include "Actions/AtomAction/ChangeElementAction.hpp"
[454065]51
[ce7fdc]52using namespace MoleCuilder;
53
[1fd675]54// and construct the stuff
55#include "ChangeElementAction.def"
56#include "Action_impl_pre.hpp"
57/** =========== define the function ====================== */
[b5b01e]58ActionState::ptr AtomChangeElementAction::performCall() {
[97ebf8]59 atom *first = NULL;
[dddbfe]60 molecule *mol = NULL;
[97ebf8]61
[f8456c]62 // create undo state
63 ElementMap Elements;
64 for (World::AtomSelectionIterator iter = World::getInstance().beginAtomSelection(); iter != World::getInstance().endAtomSelection(); ++iter) {
65 Elements.insert(std::pair<int, const element *> (iter->second->getId(), iter->second->getType()));
66 }
[1fd675]67 AtomChangeElementState *UndoState = new AtomChangeElementState(Elements, params);
[f8456c]68
[454065]69 for (World::AtomSelectionIterator iter = World::getInstance().beginAtomSelection(); iter != World::getInstance().endAtomSelection(); ++iter) {
70 first = iter->second;
[f10b0c]71 LOG(1, "Changing atom " << *first << " to element " << *params.elemental.get() << ".");
[dddbfe]72 mol = first->getMolecule();
73 first->removeFromMolecule(); // remove atom
[f10b0c]74 first->setType(params.elemental.get());
[dddbfe]75 mol->AddAtom(first); // add atom to ensure correctness of formula
[454065]76 }
[b5b01e]77 return ActionState::ptr(UndoState);
[97ebf8]78}
79
[b5b01e]80ActionState::ptr AtomChangeElementAction::performUndo(ActionState::ptr _state) {
[f8456c]81 AtomChangeElementState *state = assert_cast<AtomChangeElementState*>(_state.get());
82 atom *first = NULL;
83 molecule *mol = NULL;
[97ebf8]84
[f8456c]85 for(ElementMap::const_iterator iter = state->Elements.begin(); iter != state->Elements.end(); ++iter) {
86 first = World::getInstance().getAtom(AtomById(iter->first));
87 mol = first->getMolecule();
88 first->removeFromMolecule(); // remove atom
89 first->setType(iter->second);
90 mol->AddAtom(first); // add atom to ensure correctness of formula
91 }
92
[b5b01e]93 return ActionState::ptr(_state);
[97ebf8]94}
95
[b5b01e]96ActionState::ptr AtomChangeElementAction::performRedo(ActionState::ptr _state){
[f8456c]97 AtomChangeElementState *state = assert_cast<AtomChangeElementState*>(_state.get());
98 atom *first = NULL;
99 molecule *mol = NULL;
100
101 for(ElementMap::const_iterator iter = state->Elements.begin(); iter != state->Elements.end(); ++iter) {
102 first = World::getInstance().getAtom(AtomById(iter->first));
103 mol = first->getMolecule();
104 first->removeFromMolecule(); // remove atom
[f10b0c]105 first->setType(state->params.elemental.get());
[f8456c]106 mol->AddAtom(first); // add atom to ensure correctness of formula
107 }
108
[b5b01e]109 return ActionState::ptr(_state);
[97ebf8]110}
111
112bool AtomChangeElementAction::canUndo() {
[f8456c]113 return true;
[97ebf8]114}
115
116bool AtomChangeElementAction::shouldUndo() {
[f8456c]117 return true;
[97ebf8]118}
[1fd675]119/** =========== end of function ====================== */
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