Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since 7b9fe0 was 0aa122, checked in by Frederik Heber <heber@…>, 13 years ago |
Updated all source files's copyright note to current year 2012.
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Property mode
set to
100644
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File size:
2.1 KB
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[bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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[0aa122] | 4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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[bcf653] | 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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[97ebf8] | 8 | /*
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| 9 | * PrincipalAxisSystemAction.cpp
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| 10 | *
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| 11 | * Created on: May 12, 2010
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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[bf3817] | 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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[ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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[112b09] | 21 |
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[ad011c] | 22 | #include "CodePatterns/Log.hpp"
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| 23 | #include "CodePatterns/Verbose.hpp"
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[cca9ef] | 24 | #include "LinearAlgebra/RealSpaceMatrix.hpp"
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[6e5084] | 25 | #include "LinearAlgebra/Vector.hpp"
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[3bdb6d] | 26 | #include "Element/element.hpp"
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[6e5084] | 27 | #include "molecule.hpp"
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[97ebf8] | 28 |
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| 29 | #include <iostream>
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| 30 | #include <string>
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| 31 |
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[9ee38b] | 32 | #include "Actions/AnalysisAction/PrincipalAxisSystemAction.hpp"
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[ca1ba5] | 33 |
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[ce7fdc] | 34 | using namespace MoleCuilder;
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| 35 |
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[9ee38b] | 36 | // and construct the stuff
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| 37 | #include "PrincipalAxisSystemAction.def"
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| 38 | #include "Action_impl_pre.hpp"
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[ca1ba5] | 39 |
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[9ee38b] | 40 | /** =========== define the function ====================== */
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[ca1ba5] | 41 | Action::state_ptr AnalysisPrincipalAxisSystemAction::performCall() {
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[47d041] | 42 | LOG(0, "Evaluating prinicipal axis.");
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[b76394] | 43 | for (World::MoleculeSelectionIterator iter = World::getInstance().beginMoleculeSelection(); iter != World::getInstance().endMoleculeSelection(); ++iter) {
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| 44 | molecule *mol = iter->second;
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[4782599] | 45 |
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[1f91f4] | 46 | // get inertia tensor
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| 47 | RealSpaceMatrix InertiaTensor = mol->getInertiaTensor();
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| 48 |
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| 49 | // diagonalize matrix
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[4782599] | 50 | Vector EigenValues = InertiaTensor.transformToEigenbasis();
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| 51 |
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| 52 | // print principal axis system
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[47d041] | 53 | LOG(1, "INFO: The Principal Axis System of molecule "
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[4782599] | 54 | << mol->getName() << " is:"
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| 55 | << InertiaTensor << endl
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| 56 | << " with eigenvalues "
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[47d041] | 57 | << EigenValues);
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[b76394] | 58 | }
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[ca1ba5] | 59 | return Action::success;
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[97ebf8] | 60 | }
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| 61 |
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| 62 | Action::state_ptr AnalysisPrincipalAxisSystemAction::performUndo(Action::state_ptr _state) {
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[ca1ba5] | 63 | return Action::success;
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[97ebf8] | 64 | }
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| 65 |
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| 66 | Action::state_ptr AnalysisPrincipalAxisSystemAction::performRedo(Action::state_ptr _state){
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[ca1ba5] | 67 | return Action::success;
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[97ebf8] | 68 | }
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| 69 |
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| 70 | bool AnalysisPrincipalAxisSystemAction::canUndo() {
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[ca1ba5] | 71 | return true;
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[97ebf8] | 72 | }
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| 73 |
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| 74 | bool AnalysisPrincipalAxisSystemAction::shouldUndo() {
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[ca1ba5] | 75 | return true;
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[97ebf8] | 76 | }
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[9ee38b] | 77 | /** =========== end of function ====================== */
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