[bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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[0aa122] | 4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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[bcf653] | 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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[97ebf8] | 8 | /*
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| 9 | * PairCorrelationAction.cpp
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| 10 | *
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| 11 | * Created on: May 9, 2010
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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[bf3817] | 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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[ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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[112b09] | 21 |
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[9b5a2c] | 22 | #include "Analysis/analysis_correlation.hpp"
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[ad011c] | 23 | #include "CodePatterns/Verbose.hpp"
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| 24 | #include "CodePatterns/Log.hpp"
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[3bdb6d] | 25 | #include "Element/element.hpp"
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[104524] | 26 | #include "molecule.hpp"
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[3bdb6d] | 27 | #include "Element/periodentafel.hpp"
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[57f243] | 28 | #include "LinearAlgebra/Vector.hpp"
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[97ebf8] | 29 | #include "World.hpp"
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| 30 |
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| 31 | #include <iostream>
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| 32 | #include <string>
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| 33 |
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[9ee38b] | 34 | #include "Actions/AnalysisAction/PairCorrelationAction.hpp"
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[97ebf8] | 35 |
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[ce7fdc] | 36 | using namespace MoleCuilder;
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| 37 |
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[9ee38b] | 38 | // and construct the stuff
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| 39 | #include "PairCorrelationAction.def"
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| 40 | #include "Action_impl_pre.hpp"
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[97ebf8] | 41 |
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[9ee38b] | 42 | /** =========== define the function ====================== */
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[d02e07] | 43 | Action::state_ptr AnalysisPairCorrelationAction::performCall() {
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| 44 | int ranges[3] = {1, 1, 1};
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| 45 | ofstream output;
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| 46 | ofstream binoutput;
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| 47 | string type;
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| 48 | BinPairMap *binmap = NULL;
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[97ebf8] | 49 |
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[d02e07] | 50 | // obtain information
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[9ee38b] | 51 | getParametersfromValueStorage();
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[d02e07] | 52 |
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| 53 | // execute action
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[e4afb4] | 54 | output.open(params.outputname.string().c_str());
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| 55 | binoutput.open(params.binoutputname.string().c_str());
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[d02e07] | 56 | PairCorrelationMap *correlationmap = NULL;
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[e65de8] | 57 | std::vector<molecule*> molecules = World::getInstance().getSelectedMolecules();
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[9ee38b] | 58 | if (params.periodic)
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| 59 | correlationmap = PeriodicPairCorrelation(molecules, params.elements, ranges);
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[d02e07] | 60 | else
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[9ee38b] | 61 | correlationmap = PairCorrelation(molecules, params.elements);
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[92e5cb] | 62 | OutputCorrelationMap<PairCorrelationMap>(&output, correlationmap, OutputPairCorrelation_Header, OutputPairCorrelation_Value);
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[9ee38b] | 63 | binmap = BinData( correlationmap, params.BinWidth, params.BinStart, params.BinEnd );
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[92e5cb] | 64 | OutputCorrelationMap<BinPairMap> ( &binoutput, binmap, OutputCorrelation_Header, OutputCorrelation_Value );
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[d02e07] | 65 | delete(binmap);
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| 66 | delete(correlationmap);
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| 67 | output.close();
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| 68 | binoutput.close();
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| 69 | return Action::success;
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| 70 | }
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| 71 |
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| 72 | Action::state_ptr AnalysisPairCorrelationAction::performUndo(Action::state_ptr _state) {
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| 73 | return Action::success;
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[97ebf8] | 74 | }
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| 75 |
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| 76 | Action::state_ptr AnalysisPairCorrelationAction::performRedo(Action::state_ptr _state){
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[d02e07] | 77 | return Action::success;
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[97ebf8] | 78 | }
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| 79 |
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| 80 | bool AnalysisPairCorrelationAction::canUndo() {
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[d02e07] | 81 | return true;
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[97ebf8] | 82 | }
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| 83 |
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| 84 | bool AnalysisPairCorrelationAction::shouldUndo() {
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[d02e07] | 85 | return true;
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[97ebf8] | 86 | }
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[9ee38b] | 87 | /** =========== end of function ====================== */
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