[bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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| 4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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[97ebf8] | 8 | /*
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| 9 | * PairCorrelationAction.cpp
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| 10 | *
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| 11 | * Created on: May 9, 2010
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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[bf3817] | 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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[ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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[112b09] | 21 |
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[9b5a2c] | 22 | #include "Analysis/analysis_correlation.hpp"
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[d127c8] | 23 | #include "Tesselation/boundary.hpp"
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[104524] | 24 | #include "linkedcell.hpp"
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[ad011c] | 25 | #include "CodePatterns/Verbose.hpp"
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| 26 | #include "CodePatterns/Log.hpp"
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[97ebf8] | 27 | #include "element.hpp"
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[104524] | 28 | #include "molecule.hpp"
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[97ebf8] | 29 | #include "periodentafel.hpp"
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[57f243] | 30 | #include "LinearAlgebra/Vector.hpp"
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[97ebf8] | 31 | #include "World.hpp"
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| 32 |
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| 33 | #include <iostream>
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| 34 | #include <string>
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| 35 |
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[9ee38b] | 36 | #include "Actions/AnalysisAction/PairCorrelationAction.hpp"
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[97ebf8] | 37 |
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[ce7fdc] | 38 | using namespace MoleCuilder;
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| 39 |
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[9ee38b] | 40 | // and construct the stuff
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| 41 | #include "PairCorrelationAction.def"
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| 42 | #include "Action_impl_pre.hpp"
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[97ebf8] | 43 |
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[9ee38b] | 44 | /** =========== define the function ====================== */
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[d02e07] | 45 | Action::state_ptr AnalysisPairCorrelationAction::performCall() {
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| 46 | int ranges[3] = {1, 1, 1};
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| 47 | ofstream output;
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| 48 | ofstream binoutput;
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| 49 | string type;
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| 50 | BinPairMap *binmap = NULL;
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[97ebf8] | 51 |
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[d02e07] | 52 | // obtain information
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[9ee38b] | 53 | getParametersfromValueStorage();
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[d02e07] | 54 |
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| 55 | // execute action
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[e4afb4] | 56 | output.open(params.outputname.string().c_str());
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| 57 | binoutput.open(params.binoutputname.string().c_str());
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[d02e07] | 58 | PairCorrelationMap *correlationmap = NULL;
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[e65de8] | 59 | std::vector<molecule*> molecules = World::getInstance().getSelectedMolecules();
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[9ee38b] | 60 | if (params.periodic)
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| 61 | correlationmap = PeriodicPairCorrelation(molecules, params.elements, ranges);
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[d02e07] | 62 | else
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[9ee38b] | 63 | correlationmap = PairCorrelation(molecules, params.elements);
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[92e5cb] | 64 | OutputCorrelationMap<PairCorrelationMap>(&output, correlationmap, OutputPairCorrelation_Header, OutputPairCorrelation_Value);
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[9ee38b] | 65 | binmap = BinData( correlationmap, params.BinWidth, params.BinStart, params.BinEnd );
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[92e5cb] | 66 | OutputCorrelationMap<BinPairMap> ( &binoutput, binmap, OutputCorrelation_Header, OutputCorrelation_Value );
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[d02e07] | 67 | delete(binmap);
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| 68 | delete(correlationmap);
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| 69 | output.close();
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| 70 | binoutput.close();
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| 71 | return Action::success;
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| 72 | }
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| 73 |
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| 74 | Action::state_ptr AnalysisPairCorrelationAction::performUndo(Action::state_ptr _state) {
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| 75 | return Action::success;
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[97ebf8] | 76 | }
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| 77 |
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| 78 | Action::state_ptr AnalysisPairCorrelationAction::performRedo(Action::state_ptr _state){
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[d02e07] | 79 | return Action::success;
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[97ebf8] | 80 | }
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| 81 |
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| 82 | bool AnalysisPairCorrelationAction::canUndo() {
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[d02e07] | 83 | return true;
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[97ebf8] | 84 | }
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| 85 |
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| 86 | bool AnalysisPairCorrelationAction::shouldUndo() {
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[d02e07] | 87 | return true;
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[97ebf8] | 88 | }
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[9ee38b] | 89 | /** =========== end of function ====================== */
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