source: src/Actions/AnalysisAction/PairCorrelationAction.cpp@ 2fadb6f

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Last change on this file since 2fadb6f was 9b5a2c, checked in by Frederik Heber <heber@…>, 13 years ago

Moved analysis modules into subfolder Analysis along with its unit tests.

  • new Makefiles are included in src/Makefile.am and src/unittests/Makefile.am.
  • Property mode set to 100644
File size: 2.5 KB
RevLine 
[bcf653]1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2010 University of Bonn. All rights reserved.
5 * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
6 */
7
[97ebf8]8/*
9 * PairCorrelationAction.cpp
10 *
11 * Created on: May 9, 2010
12 * Author: heber
13 */
14
[bf3817]15// include config.h
16#ifdef HAVE_CONFIG_H
17#include <config.h>
18#endif
19
[ad011c]20#include "CodePatterns/MemDebug.hpp"
[112b09]21
[9b5a2c]22#include "Analysis/analysis_correlation.hpp"
[d127c8]23#include "Tesselation/boundary.hpp"
[104524]24#include "linkedcell.hpp"
[ad011c]25#include "CodePatterns/Verbose.hpp"
26#include "CodePatterns/Log.hpp"
[97ebf8]27#include "element.hpp"
[104524]28#include "molecule.hpp"
[97ebf8]29#include "periodentafel.hpp"
[57f243]30#include "LinearAlgebra/Vector.hpp"
[97ebf8]31#include "World.hpp"
32
33#include <iostream>
34#include <string>
35
[9ee38b]36#include "Actions/AnalysisAction/PairCorrelationAction.hpp"
[97ebf8]37
[ce7fdc]38using namespace MoleCuilder;
39
[9ee38b]40// and construct the stuff
41#include "PairCorrelationAction.def"
42#include "Action_impl_pre.hpp"
[97ebf8]43
[9ee38b]44/** =========== define the function ====================== */
[d02e07]45Action::state_ptr AnalysisPairCorrelationAction::performCall() {
46 int ranges[3] = {1, 1, 1};
47 ofstream output;
48 ofstream binoutput;
49 string type;
50 BinPairMap *binmap = NULL;
[97ebf8]51
[d02e07]52 // obtain information
[9ee38b]53 getParametersfromValueStorage();
[d02e07]54
55 // execute action
[e4afb4]56 output.open(params.outputname.string().c_str());
57 binoutput.open(params.binoutputname.string().c_str());
[d02e07]58 PairCorrelationMap *correlationmap = NULL;
[e65de8]59 std::vector<molecule*> molecules = World::getInstance().getSelectedMolecules();
[9ee38b]60 if (params.periodic)
61 correlationmap = PeriodicPairCorrelation(molecules, params.elements, ranges);
[d02e07]62 else
[9ee38b]63 correlationmap = PairCorrelation(molecules, params.elements);
[92e5cb]64 OutputCorrelationMap<PairCorrelationMap>(&output, correlationmap, OutputPairCorrelation_Header, OutputPairCorrelation_Value);
[9ee38b]65 binmap = BinData( correlationmap, params.BinWidth, params.BinStart, params.BinEnd );
[92e5cb]66 OutputCorrelationMap<BinPairMap> ( &binoutput, binmap, OutputCorrelation_Header, OutputCorrelation_Value );
[d02e07]67 delete(binmap);
68 delete(correlationmap);
69 output.close();
70 binoutput.close();
71 return Action::success;
72}
73
74Action::state_ptr AnalysisPairCorrelationAction::performUndo(Action::state_ptr _state) {
75 return Action::success;
[97ebf8]76}
77
78Action::state_ptr AnalysisPairCorrelationAction::performRedo(Action::state_ptr _state){
[d02e07]79 return Action::success;
[97ebf8]80}
81
82bool AnalysisPairCorrelationAction::canUndo() {
[d02e07]83 return true;
[97ebf8]84}
85
86bool AnalysisPairCorrelationAction::shouldUndo() {
[d02e07]87 return true;
[97ebf8]88}
[9ee38b]89/** =========== end of function ====================== */
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