Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since df9cbd was 6f0841, checked in by Frederik Heber <heber@…>, 13 years ago |
Shifted all modules related to atoms into own subfolder src/Atom/
- also created own convenience library for this. This makes unit testing on
list containing TesselPoint or atom a lot easier.
- shifted TesselPoint to src/Atom from src/Tesselation and adapted include's.
|
-
Property mode
set to
100644
|
File size:
1.4 KB
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Rev | Line | |
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[55f299] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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[d103d3] | 4 | * Copyright (C) 2010-2011 University of Bonn. All rights reserved.
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[55f299] | 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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| 8 | /*
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| 9 | * CalculateMolarMassAction.cpp
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| 10 | *
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| 11 | * Created on: Nov 02, 2011
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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| 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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| 20 | #include "CodePatterns/MemDebug.hpp"
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| 21 |
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| 22 | #include "CodePatterns/Log.hpp"
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| 23 |
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[6f0841] | 24 | #include "Atom/atom.hpp"
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[55f299] | 25 | #include "Element/element.hpp"
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| 26 | #include "World.hpp"
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| 27 |
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| 28 | #include <iostream>
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| 29 | #include <string>
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| 30 |
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| 31 | #include "CalculateMolarMassAction.hpp"
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| 32 |
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| 33 | using namespace MoleCuilder;
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| 34 |
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| 35 | // and construct the stuff
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| 36 | #include "CalculateMolarMassAction.def"
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| 37 | #include "Reaction_impl_pre.hpp"
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| 38 |
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| 39 | #include "Reaction_impl.hpp"
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| 40 |
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| 41 | /** =========== define the function ====================== */
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| 42 | double * AnalysisCalculateMolarMassAction::doCalc() {
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| 43 | double mass = 0.;
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| 44 | size_t totalnumber = 0;
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| 45 | // calculate volume from Box
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| 46 | for(World::AtomSelectionConstIterator iter = World::getInstance().beginAtomSelection();
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| 47 | iter != World::getInstance().endAtomSelection();
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| 48 | ++iter) {
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| 49 | mass += iter->second->getType()->getMass();
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| 50 | ++totalnumber;
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| 51 | }
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| 52 | LOG(0, "RESULT: The mass of " << totalnumber << " selected atoms is " << mass << " atomicmassunit.");
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| 53 |
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| 54 | return (new double(mass));
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| 55 | }
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| 56 | /** =========== end of function ====================== */
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