source: src/Actions/ActionQueue.cpp@ fae462

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since fae462 was f3db60, checked in by Frederik Heber <heber@…>, 10 years ago

Added DryRun and NoDryRun actions.

  • actions (un)set a flag inside ActionQueue to which only those permitted by an advocate pattern have access.
  • added testsuite tests for both dry-run, no-dry-run, and storing sessions.
  • explained use of action in userguide.
  • Property mode set to 100644
File size: 10.9 KB
RevLine 
[628577]1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2013 Frederik Heber. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * ActionQueue.cpp
25 *
26 * Created on: Aug 16, 2013
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35#include "CodePatterns/MemDebug.hpp"
36
[1d3563]37#include "Actions/ActionQueue.hpp"
[628577]38
[690741]39#include "CodePatterns/Assert.hpp"
40#include "CodePatterns/IteratorAdaptors.hpp"
[46b181]41#include "CodePatterns/Log.hpp"
[628577]42#include "CodePatterns/Singleton_impl.hpp"
43
[415ddd]44#include <boost/date_time/posix_time/posix_time.hpp>
45#include <boost/version.hpp>
[601ef8]46#include <iterator>
[46b181]47#include <string>
48#include <sstream>
[690741]49#include <vector>
50
[0d4168]51#include "Actions/ActionExceptions.hpp"
[6367dd]52#include "Actions/ActionHistory.hpp"
[ed3944]53#include "Actions/ActionRegistry.hpp"
[0d4168]54#include "World.hpp"
[ed3944]55
[628577]56using namespace MoleCuilder;
57
[29b52b]58const Action* ActionQueue::_lastchangedaction = NULL;
59
[ed3944]60ActionQueue::ActionQueue() :
[29b52b]61 Observable("ActionQueue"),
[6367dd]62 AR(new ActionRegistry()),
[af5384]63 history(new ActionHistory),
[74459a]64#ifndef HAVE_ACTION_THREAD
[f3db60]65 lastActionOk(true),
[74459a]66#else
[601ef8]67 CurrentAction(0),
[a61dbb]68 lastActionOk(true),
[415ddd]69 run_thread(boost::bind(&ActionQueue::run, this)),
[f3db60]70 run_thread_isIdle(true),
[74459a]71#endif
[f3db60]72 dryrun_flag(false)
[29b52b]73{
74 // channels of observable
75 Channels *OurChannel = new Channels;
76 NotificationChannels.insert( std::make_pair(static_cast<Observable *>(this), OurChannel) );
77 // add instance for each notification type
78 for (size_t type = 0; type < NotificationType_MAX; ++type)
79 OurChannel->addChannel(type);
80}
[628577]81
82ActionQueue::~ActionQueue()
[ed3944]83{
[74459a]84#ifdef HAVE_ACTION_THREAD
[415ddd]85 stop();
[601ef8]86
87 clearTempQueue();
[74459a]88#endif
[415ddd]89
[7f1a1a]90 clearQueue();
[af5384]91
[6367dd]92 delete history;
[ed3944]93 delete AR;
94}
[628577]95
[f54cda]96void ActionQueue::queueAction(const std::string &name, enum Action::QueryOptions state)
[05c989]97{
[7f1a1a]98 const Action * const registryaction = AR->getActionByName(name);
99 queueAction(registryaction, state);
[f54cda]100}
101
[7f1a1a]102void ActionQueue::queueAction(const Action * const _action, enum Action::QueryOptions state)
[f54cda]103{
[af5384]104 Action *newaction = _action->clone(state);
105 newaction->prepare(state);
[74459a]106#ifdef HAVE_ACTION_THREAD
[415ddd]107 mtx_queue.lock();
[74459a]108#endif
[7fc447]109 actionqueue.push_back( newaction );
[74459a]110#ifndef HAVE_ACTION_THREAD
111 try {
[f3db60]112 if (!isDryRun(newaction))
113 newaction->call();
[a61dbb]114 lastActionOk = true;
[74459a]115 } catch(ActionFailureException &e) {
116 std::cerr << "Action " << *boost::get_error_info<ActionNameString>(e) << " has failed." << std::endl;
117 World::getInstance().setExitFlag(5);
[601ef8]118 clearQueue(actionqueue.size()-1);
[a61dbb]119 lastActionOk = false;
[601ef8]120 std::cerr << "Remaining Actions cleared from queue." << std::endl;
[11d433]121 } catch (std::exception &e) {
122 pushStatus("FAIL: General exception caught, aborting.");
123 World::getInstance().setExitFlag(134);
[601ef8]124 clearQueue(actionqueue.size()-1);
[11d433]125 lastActionOk = false;
[601ef8]126 std::cerr << "Remaining Actions cleared from queue." << std::endl;
[74459a]127 }
[cfb9c5]128 if (lastActionOk) {
129 OBSERVE;
130 NOTIFY(ActionQueued);
131 _lastchangedaction = newaction;
132 }
[74459a]133#else
[601ef8]134 setRunThreadIdle(CurrentAction == actionqueue.size());
[415ddd]135 mtx_queue.unlock();
[74459a]136#endif
[05c989]137}
138
[975b83]139void ActionQueue::insertAction(Action *_action, enum Action::QueryOptions state)
140{
[74459a]141#ifndef HAVE_ACTION_THREAD
142 queueAction(_action, state);
143#else
[415ddd]144 Action *newaction = _action->clone(state);
145 newaction->prepare(state);
146 mtx_queue.lock();
147 tempqueue.push_back( newaction );
[601ef8]148 setRunThreadIdle( !((CurrentAction != actionqueue.size()) || !tempqueue.empty()) );
[415ddd]149 mtx_queue.unlock();
[74459a]150#endif
[415ddd]151}
152
[74459a]153#ifdef HAVE_ACTION_THREAD
[415ddd]154void ActionQueue::run()
155{
156 bool Interrupted = false;
157 do {
158 // sleep for some time and wait for queue to fill up again
159 try {
160#if BOOST_VERSION < 105000
161 run_thread.sleep(boost::get_system_time() + boost::posix_time::milliseconds(100));
162#else
[d93b4b3]163 boost::this_thread::sleep_for(boost::chrono::milliseconds(100));
[415ddd]164#endif
165 } catch(boost::thread_interrupted &e) {
166 LOG(2, "INFO: ActionQueue has received stop signal.");
167 Interrupted = true;
168 }
169// LOG(1, "DEBUG: Start of ActionQueue's run() loop.");
170 // call all currently present Actions
171 mtx_queue.lock();
172 insertTempQueue();
173 bool status = (CurrentAction != actionqueue.size());
174 mtx_queue.unlock();
175 while (status) {
176 // boost::this_thread::disable_interruption di;
177 LOG(0, "Calling Action " << actionqueue[CurrentAction]->getName() << " ... ");
178 try {
[f3db60]179 if (!isDryRun(actionqueue[CurrentAction]))
180 actionqueue[CurrentAction]->call();
[0b6b77]181 pushStatus("SUCCESS: Action "+actionqueue[CurrentAction]->getName()+" successful.");
[a61dbb]182 lastActionOk = true;
[415ddd]183 } catch(ActionFailureException &e) {
[0b6b77]184 pushStatus("FAIL: Action "+*boost::get_error_info<ActionNameString>(e)+" has failed.");
[415ddd]185 World::getInstance().setExitFlag(5);
[601ef8]186 clearQueue(CurrentAction);
187 clearTempQueue();
[a61dbb]188 lastActionOk = false;
[601ef8]189 std::cerr << "Remaining Actions cleared from queue." << std::endl;
[11d433]190 } catch (std::exception &e) {
191 pushStatus("FAIL: General exception caught, aborting.");
192 World::getInstance().setExitFlag(134);
[601ef8]193 clearQueue(CurrentAction);
194 clearTempQueue();
195 std::cerr << "Remaining Actions cleared from queue." << std::endl;
[415ddd]196 }
[cfb9c5]197 if (lastActionOk) {
198 OBSERVE;
199 NOTIFY(ActionQueued);
200 _lastchangedaction = actionqueue[CurrentAction];
[601ef8]201 mtx_queue.lock();
202 CurrentAction++;
203 mtx_queue.unlock();
[cfb9c5]204 }
[415ddd]205 // access actionqueue, hence using mutex
206 mtx_queue.lock();
207 // insert new actions (before [CurrentAction]) if they have been spawned
208 // we must have an extra vector for this, as we cannot change actionqueue
209 // while an action instance is "in-use"
210 insertTempQueue();
211 status = (CurrentAction != actionqueue.size());
212 mtx_queue.unlock();
213 }
[601ef8]214 setRunThreadIdle( !((CurrentAction != actionqueue.size()) || !tempqueue.empty()) );
[415ddd]215 cond_idle.notify_one();
216// LOG(1, "DEBUG: End of ActionQueue's run() loop.");
217 } while (!Interrupted);
218}
219
220void ActionQueue::insertTempQueue()
221{
222 if (!tempqueue.empty()) {
223 ActionQueue_t::iterator InsertionIter = actionqueue.begin();
224 std::advance(InsertionIter, CurrentAction);
225 actionqueue.insert( InsertionIter, tempqueue.begin(), tempqueue.end() );
226 tempqueue.clear();
227 }
228}
229
230void ActionQueue::wait()
231{
232 boost::unique_lock<boost::mutex> lock(mtx_idle);
233 while(!run_thread_isIdle)
234 {
235 cond_idle.wait(lock);
236 }
237}
[74459a]238#endif
[415ddd]239
[74459a]240#ifdef HAVE_ACTION_THREAD
[415ddd]241void ActionQueue::stop()
242{
243 // notify actionqueue thread that we wish to terminate
244 run_thread.interrupt();
245 // wait till it ends
246 run_thread.join();
[975b83]247}
[74459a]248#endif
[975b83]249
[a6ceab]250Action* ActionQueue::getActionByName(const std::string &name)
[1d3563]251{
[ed3944]252 return AR->getActionByName(name);
[1d3563]253}
254
[a6ceab]255bool ActionQueue::isActionKnownByName(const std::string &name) const
[1d3563]256{
[ed3944]257 return AR->isActionPresentByName(name);
[1d3563]258}
259
[126867]260void ActionQueue::registerAction(Action *_action)
261{
262 AR->registerInstance(_action);
263}
264
[46b181]265void ActionQueue::outputAsCLI(std::ostream &output) const
266{
[7fc447]267 for (ActionQueue_t::const_iterator iter = actionqueue.begin();
268 iter != actionqueue.end();
[46b181]269 ++iter) {
[bad589]270 // skip store-session in printed list
[12d946]271 if ( ((*iter)->getName() != std::string("store-session"))
272 && ((*iter)->getName() != std::string("load-session"))) {
[7fc447]273 if (iter != actionqueue.begin())
[bad589]274 output << " ";
275 (*iter)->outputAsCLI(output);
276 }
[46b181]277 }
278 output << std::endl;
279}
280
[477012]281void ActionQueue::outputAsPython(std::ostream &output) const
282{
283 const std::string prefix("pyMoleCuilder");
284 output << "import " << prefix << std::endl;
[9e4655]285 output << "# ========================== Stored Session BEGIN ==========================" << std::endl;
[7fc447]286 for (ActionQueue_t::const_iterator iter = actionqueue.begin();
287 iter != actionqueue.end();
[477012]288 ++iter) {
289 // skip store-session in printed list
[12d946]290 if ( ((*iter)->getName() != std::string("store-session"))
291 && ((*iter)->getName() != std::string("load-session")))
[477012]292 (*iter)->outputAsPython(output, prefix);
293 }
[9e4655]294 output << "# =========================== Stored Session END ===========================" << std::endl;
[477012]295}
296
[a6ceab]297const ActionTrait& ActionQueue::getActionsTrait(const std::string &name) const
[690741]298{
299 // this const_cast is just required as long as we have a non-const getActionByName
300 const Action * const action = const_cast<ActionQueue *>(this)->getActionByName(name);
301 return action->Traits;
302}
303
[6367dd]304void ActionQueue::addElement(Action* _Action,ActionState::ptr _state)
305{
306 history->addElement(_Action, _state);
307}
308
309void ActionQueue::clear()
310{
311 history->clear();
312}
313
[601ef8]314void ActionQueue::clearQueue(const size_t _fromAction)
[7f1a1a]315{
[601ef8]316#ifdef HAVE_ACTION_THREAD
317 mtx_queue.lock();
318#endif
319 LOG(1, "Removing all Actions from position " << _fromAction << " onward.");
320 // free all actions still to be called contained in actionqueue
321 ActionQueue_t::iterator inititer = actionqueue.begin();
322 std::advance(inititer, _fromAction);
323 for (ActionQueue_t::iterator iter = inititer; iter != actionqueue.end(); ++iter)
[7f1a1a]324 delete *iter;
[601ef8]325 actionqueue.erase(inititer, actionqueue.end());
326 LOG(1, "There are " << actionqueue.size() << " remaining Actions.");
327#ifdef HAVE_ACTION_THREAD
328 CurrentAction = actionqueue.size();
329 mtx_queue.unlock();
330#endif
331}
332
333#ifdef HAVE_ACTION_THREAD
334void ActionQueue::clearTempQueue()
335{
[7f1a1a]336 // free all actions contained in tempqueue
337 for (ActionQueue_t::iterator iter = tempqueue.begin();
338 !tempqueue.empty(); iter = tempqueue.begin()) {
339 delete *iter;
340 tempqueue.erase(iter);
341 }
[601ef8]342}
343
344void ActionQueue::setRunThreadIdle(const bool _flag)
345{
[06b5df]346 {
347 boost::unique_lock<boost::mutex> lock(mtx_idle);
[601ef8]348 run_thread_isIdle = _flag;
[06b5df]349 }
[7f1a1a]350}
[601ef8]351#endif
[6367dd]352
[690741]353const ActionQueue::ActionTokens_t ActionQueue::getListOfActions() const
354{
355 ActionTokens_t returnlist;
356
357 returnlist.insert(
358 returnlist.end(),
[ed3944]359 MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getBeginIter()),
360 MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getEndIter()));
[690741]361
362 return returnlist;
363}
364
[6367dd]365void ActionQueue::undoLast()
366{
367 history->undoLast();
368}
369
[c01fec]370bool ActionQueue::canUndo() const
371{
372 return history->hasUndo();
373}
374
[6367dd]375void ActionQueue::redoLast()
376{
377 history->redoLast();
378}
379
[c01fec]380bool ActionQueue::canRedo() const
381{
382 return history->hasRedo();
383}
384
[f3db60]385bool ActionQueue::isDryRun(const Action *_nextaction) const
386{
387 bool status = dryrun_flag;
388 status &= (_nextaction->getName() != "no-dry-run");
389 return status;
390}
[6367dd]391
[628577]392CONSTRUCT_SINGLETON(ActionQueue)
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