source: molecuilder/src@ 2e06c4

Name Size Rev Age Author Last Change
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Actions 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
Descriptors 5738177   15 years Till Crueger Added a generic Iterator that can be used to iterate only over certain …
Exceptions 7a8319   15 years Till Crueger Added more Exceptions to the project to signal differen Math erorrs
Helpers 93b12d   15 years FrederikHeber FIX: strncpy was lacking cstring include.
Legacy 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
Menu 770138   15 years Till Crueger Added mechanism that deactivates undo and redo menupoint if not applicable
Parser 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
Patterns 65b413   15 years Till Crueger Small improvements to Observer code
test 1f591b   15 years Till Crueger Prepared interface of Vector Class for transition to VectorComposites
UIElements 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
unittests 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
Views 98a2987   15 years Till Crueger Added -Wall flag and fixed several small hickups
analysis_bonds.cpp 11.0 KB ​ 6250e5   15 years FrederikHeber Enhanced CountHydrogenBridgeBonds() a bit. - new functions …
analysis_bonds.hpp 1.3 KB ​ 794482   15 years FrederikHeber Moved functions CountBondsOfTwo(), CountBondsOfThree() and …
analysis_correlation.cpp 19.3 KB ​ 4eee8f   15 years Till Crueger Declared the Vector class as single point spaces
analysis_correlation.hpp 5.2 KB ​ 12f57b   15 years FrederikHeber Log() and eLog() are prepended by a DoLog()/DoeLog() construct. - …
analyzer.cpp 33.9 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
atom.cpp 9.4 KB ​ 4eee8f   15 years Till Crueger Declared the Vector class as single point spaces
atom.hpp 3.6 KB ​ 5dba7a   15 years Till Crueger Made the periodentafel use STL-containers instead of custom llists
atom_atominfo.cpp 553 bytes ​ 5dba7a   15 years Till Crueger Made the periodentafel use STL-containers instead of custom llists
atom_atominfo.hpp 1.0 KB ​ 5dba7a   15 years Till Crueger Made the periodentafel use STL-containers instead of custom llists
atom_bondedparticle.cpp 5.9 KB ​ d3513b   15 years Saskia Metzler Tremolo format parser
atom_bondedparticle.hpp 1.3 KB ​ d3513b   15 years Saskia Metzler Tremolo format parser
atom_bondedparticleinfo.cpp 360 bytes ​ 2e2a70   16 years FrederikHeber Refactored atom.cpp into multiple files. After the class atom was …
atom_bondedparticleinfo.hpp 1012 bytes ​ 2e2a70   16 years FrederikHeber Refactored atom.cpp into multiple files. After the class atom was …
atom_graphnode.cpp 1.1 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
atom_graphnode.hpp 846 bytes ​ 543ce4   16 years FrederikHeber Huge change from ofstream * (const) out --> Log(). - first shift was …
atom_graphnodeinfo.cpp 477 bytes ​ 2e2a70   16 years FrederikHeber Refactored atom.cpp into multiple files. After the class atom was …
atom_graphnodeinfo.hpp 1.4 KB ​ 2e2a70   16 years FrederikHeber Refactored atom.cpp into multiple files. After the class atom was …
atom_particleinfo.cpp 833 bytes ​ d3513b   15 years Saskia Metzler Tremolo format parser
atom_particleinfo.hpp 909 bytes ​ 7bfc19   15 years Till Crueger Made the world solely responsible for creating and destroying atoms.
atom_trajectoryparticle.cpp 9.7 KB ​ 4eee8f   15 years Till Crueger Declared the Vector class as single point spaces
atom_trajectoryparticle.hpp 2.1 KB ​ 94d0ad   16 years FrederikHeber Begun with ticket #38 (make const what is const). - basically all …
atom_trajectoryparticleinfo.cpp 441 bytes ​ 2e2a70   16 years FrederikHeber Refactored atom.cpp into multiple files. After the class atom was …
atom_trajectoryparticleinfo.hpp 912 bytes ​ 2e2a70   16 years FrederikHeber Refactored atom.cpp into multiple files. After the class atom was …
bond.cpp 3.6 KB ​ d3513b   15 years Saskia Metzler Tremolo format parser
bond.hpp 2.0 KB ​ 1fcedd   16 years FrederikHeber New function bond::GetDistance...() - bond::GetDistance() and …
bondgraph.cpp 5.9 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
bondgraph.hpp 1.6 KB ​ 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
boundary.cpp 50.8 KB ​ d2390d   15 years FrederikHeber Don't exit when no starting triangle has been found. - The issue is …
boundary.hpp 2.8 KB ​ 850e50   15 years FrederikHeber Filling has a MaxDistance, somes changes to the Correlation Analysis. …
builder.cpp 115.5 KB ​ 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
CommandLineParser.cpp 1.8 KB ​ 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
CommandLineParser.hpp 1.7 KB ​ 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
config.cpp 106.4 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
config.hpp 4.5 KB ​ 538744   16 years Till Crueger Moved saveConfig method from oldmenu to a method inside config class
datacreator.cpp 35.8 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
datacreator.hpp 5.0 KB ​ 17b3a5c   16 years FrederikHeber forward declarations used to untangle interdependet classes. - …
defs.hpp 4.9 KB ​ 6acc8e4   15 years FrederikHeber Shifted BONDTHRESHOLD from defs.hpp over to bondgraph.hpp and lowered …
element.cpp 1.7 KB ​ 5dba7a   15 years Till Crueger Made the periodentafel use STL-containers instead of custom llists
element.hpp 2.0 KB ​ 5dba7a   15 years Till Crueger Made the periodentafel use STL-containers instead of custom llists
elements.db 4.4 KB ​ e08f45   17 years FrederikHeber Merge branch 'ConcaveHull' of ../espack2 into ConcaveHull Conflicts: …
ellipsoid.cpp 16.9 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
ellipsoid.hpp 1.2 KB ​ 543ce4   16 years FrederikHeber Huge change from ofstream * (const) out --> Log(). - first shift was …
errorlogger.cpp 1.9 KB ​ ad98d4   15 years FrederikHeber FIX: errorLogger now has absolute verbosity (i.e. CRITIAL is whatever …
errorlogger.hpp 807 bytes ​ e9f2e1   15 years Till Crueger Made the errorLogger use the new Singleton framework
graph.cpp 3.8 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
graph.hpp 2.9 KB ​ 543ce4   16 years FrederikHeber Huge change from ofstream * (const) out --> Log(). - first shift was …
gslmatrix.cpp 7.2 KB ​ 71910a   15 years Till Crueger Made data internal data-structure of vector class private - Replaced …
gslmatrix.hpp 1.4 KB ​ 70e11d   16 years FrederikHeber Inclusion of config.h was missing. This caused a bug with GSL's …
gslvector.cpp 7.7 KB ​ b1d8ab5   15 years FrederikHeber Added operators and state checkers to GSLVector. - added operators …
gslvector.hpp 1.8 KB ​ b1d8ab5   15 years FrederikHeber Added operators and state checkers to GSLVector. - added operators …
Hbondangle.db 180 bytes ​ e08f45   17 years FrederikHeber Merge branch 'ConcaveHull' of ../espack2 into ConcaveHull Conflicts: …
Hbonddistance.db 204 bytes ​ e08f45   17 years FrederikHeber Merge branch 'ConcaveHull' of ../espack2 into ConcaveHull Conflicts: …
helpers.cpp 6.7 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
helpers.hpp 5.4 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
info.cpp 721 bytes ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
info.hpp 609 bytes ​ edf611   16 years FrederikHeber New Info class that contains a global verbosity level, increased per …
joiner.cpp 11.6 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
leastsquaremin.cpp 686 bytes ​ 71910a   15 years Till Crueger Made data internal data-structure of vector class private - Replaced …
leastsquaremin.hpp 950 bytes ​ 5dba7a   15 years Till Crueger Made the periodentafel use STL-containers instead of custom llists
Line.cpp 632 bytes ​ 25e17e9   15 years Till Crueger Added a line class that represents one dimensional subspaces
Line.hpp 493 bytes ​ 25e17e9   15 years Till Crueger Added a line class that represents one dimensional subspaces
linearsystemofequations.cpp 3.6 KB ​ 71910a   15 years Till Crueger Made data internal data-structure of vector class private - Replaced …
linearsystemofequations.hpp 1.1 KB ​ 70e11d   16 years FrederikHeber Inclusion of config.h was missing. This caused a bug with GSL's …
linkedcell.cpp 14.0 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
linkedcell.hpp 2.4 KB ​ 41c00d   15 years FrederikHeber BUGFIX: LinkedCell::GetPointsInsideSphere() did not work if center of …
lists.cpp 412 bytes ​ 7bfc19   15 years Till Crueger Made the world solely responsible for creating and destroying atoms.
lists.hpp 4.1 KB ​ 7bfc19   15 years Till Crueger Made the world solely responsible for creating and destroying atoms.
log.cpp 1.4 KB ​ ad98d4   15 years FrederikHeber FIX: errorLogger now has absolute verbosity (i.e. CRITIAL is whatever …
log.hpp 323 bytes ​ 12f57b   15 years FrederikHeber Log() and eLog() are prepended by a DoLog()/DoeLog() construct. - …
logger.cpp 1.4 KB ​ c3f8c4   15 years Till Crueger Made logger class use the new Singleton framework
logger.hpp 752 bytes ​ c3f8c4   15 years Till Crueger Made logger class use the new Singleton framework
Makefile.am 12.9 KB ​ 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
memoryallocator.hpp 4.1 KB ​ 2c69a9   16 years FrederikHeber cstdlib header was missing, necessary for free, malloc and calloc …
memoryusageobserver.cpp 2.9 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
memoryusageobserver.hpp 1.3 KB ​ 17b3a5c   16 years FrederikHeber forward declarations used to untangle interdependet classes. - …
molecule.cpp 46.2 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
molecule.hpp 21.4 KB ​ 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
molecule_dynamics.cpp 34.6 KB ​ 4eee8f   15 years Till Crueger Declared the Vector class as single point spaces
molecule_fragmentation.cpp 78.1 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
molecule_geometry.cpp 17.7 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
molecule_graph.cpp 62.8 KB ​ aa8542   15 years FrederikHeber BUGFIX: BondGraphUnitTest was not working. Changes: - atoms are now …
molecule_pointcloud.cpp 2.1 KB ​ ff4611   16 years FrederikHeber Attempt to fix the embedding. Basically it would be working, but …
molecule_template.hpp 16.8 KB ​ 1f591b   15 years Till Crueger Prepared interface of Vector Class for transition to VectorComposites
moleculelist.cpp 48.2 KB ​ 4eee8f   15 years Till Crueger Declared the Vector class as single point spaces
orbitals.db 442 bytes ​ e08f45   17 years FrederikHeber Merge branch 'ConcaveHull' of ../espack2 into ConcaveHull Conflicts: …
parser.cpp 47.5 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
parser.hpp 4.8 KB ​ 17b3a5c   16 years FrederikHeber forward declarations used to untangle interdependet classes. - …
periodentafel.cpp 11.1 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
periodentafel.hpp 1.8 KB ​ 5dba7a   15 years Till Crueger Made the periodentafel use STL-containers instead of custom llists
Plane.cpp 6.8 KB ​ 59e7832   15 years Till Crueger Added unittests for planes
Plane.hpp 1.6 KB ​ 59e7832   15 years Till Crueger Added unittests for planes
ReMapDBondFileFromXYZ.py 5.9 KB ​ 3e20fe   17 years neuen Parses a pdb and xyz file and decideds which atoms are in both and …
Space.cpp 317 bytes ​ f70c2a   15 years Till Crueger Added const correctness to plane class and simplified interface
Space.hpp 420 bytes ​ f70c2a   15 years Till Crueger Added const correctness to plane class and simplified interface
stackclass.hpp 8.1 KB ​ 1f2e46   15 years FrederikHeber Huge change: Log() << Verbose(.) --> DoLog(.) && (Log() << Verbose(.) …
tesselation.cpp 230.1 KB ​ d3513b   15 years Saskia Metzler Tremolo format parser
tesselation.hpp 16.0 KB ​ f07455   15 years FrederikHeber FIX: Tesselation::FindStartingTriangle() returns false when no …
tesselationhelpers.cpp 40.0 KB ​ 4eee8f   15 years Till Crueger Declared the Vector class as single point spaces
tesselationhelpers.hpp 3.8 KB ​ ff4611   16 years FrederikHeber Attempt to fix the embedding. Basically it would be working, but …
triangleintersectionlist.cpp 6.1 KB ​ 4eee8f   15 years Till Crueger Declared the Vector class as single point spaces
triangleintersectionlist.hpp 1.6 KB ​ f7b476   15 years FrederikHeber New class TriangleIntersection List and (hopefully) final fix of …
types.hpp 412 bytes ​ 5dba7a   15 years Till Crueger Made the periodentafel use STL-containers instead of custom llists
valence.db 1.5 KB ​ e08f45   17 years FrederikHeber Merge branch 'ConcaveHull' of ../espack2 into ConcaveHull Conflicts: …
vector.cpp 18.7 KB ​ 59e7832   15 years Till Crueger Added unittests for planes
vector.hpp 3.7 KB ​ 59e7832   15 years Till Crueger Added unittests for planes
vector_ops.cpp 6.9 KB ​ 59e7832   15 years Till Crueger Added unittests for planes
vector_ops.hpp 431 bytes ​ 71910a   15 years Till Crueger Made data internal data-structure of vector class private - Replaced …
verbose.cpp 2.5 KB ​ ad98d4   15 years FrederikHeber FIX: errorLogger now has absolute verbosity (i.e. CRITIAL is whatever …
verbose.hpp 1.4 KB ​ ad98d4   15 years FrederikHeber FIX: errorLogger now has absolute verbosity (i.e. CRITIAL is whatever …
version.h 98 bytes ​ 0af58f   16 years FrederikHeber Fixed versioning. - FIX: version.h was falsely excluded in .gitignore …
World.cpp 7.2 KB ​ 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
World.hpp 8.2 KB ​ 2e06c4   15 years FrederikHeber Added all commands defined in ParseCommandLineOptions() as Actions. - …
World_calculations.hpp 595 bytes ​ bb89b9   15 years Till Crueger Added overloaded methods for all methods in the world taking an …
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