source: molecuilder/src/defs.hpp@ 6b3826

Last change on this file since 6b3826 was 79cd79, checked in by Frederik Heber <heber@…>, 17 years ago

new function: molecule::OutputTemperatureFromTrajectories() stores velocities as temperature

In order to use VibrAlyzer we need a temperature file, which we don't have anymore as we do the M
D in molecuilder now. Hence, there is a new command line switch (-L) and a menu item in MeasureAt
oms() in order to print temperature or to store it to a given file.

  • Property mode set to 100644
File size: 4.1 KB
Line 
1/** \file defs.hpp
2 *
3 * Constant definitons and enumerations.
4 *
5 */
6
7#ifndef DEFS_HPP_
8#define DEFS_HPP_
9
10using namespace std;
11
12#define MYEPSILON 1e-13 //!< machine epsilon precision
13#define NDIM 3 //!< number of spatial dimensions
14#define MAX_ELEMENTS 128 //!< maximum number of elements for certain lookup tables
15#define AtomicLengthToAngstroem 0.52917721 //!< conversion factor from atomic length/bohrradius to angstroem
16#define BONDTHRESHOLD 0.5 //!< CSD threshold in bond check which is the width of the interval whose center is the sum of the covalent radii
17#define AtomicEnergyToKelvin 315774.67 //!< conversion factor from atomic energy to kelvin via boltzmann factor
18#define VERSIONSTRING "v1.0"
19
20#define LocalPath "./"
21
22//enum BondOrderScheme { NoScheme, BottomUp, TopDown, ANOVA, Combined }; //!< Fragmentation scheme used in BOSS
23
24enum EdgeType { Undetermined, TreeEdge, BackEdge }; //!< edge type in a graph after Depth-First-Search analysis.
25
26enum Shading { white, lightgray, darkgray, black }; //!< color in Breadth-First-Search analysis
27
28//enum CutCyclicBond { KeepBond, SaturateBond }; //!< Saturation scheme either atom- or bondwise
29
30// Specifting whether a value in the parameter file must be specified or is optional
31enum necessity { optional, //!< parameter is optional, if not given sensible value is chosen
32 critical //!< parameter must be given or programme won't initiate
33 };
34
35// Specifying the status of the on command line given config file
36enum ConfigStatus { absent, empty, present };
37
38// Specifying the cast type to be read of a parameter, see ParseForParameter()
39enum value_type { string_type, double_type, int_type, row_int, row_double, grid, lower_trigrid, upper_trigrid};
40
41// maximum length of any char array
42#define MAXSTRINGSIZE 255
43
44// various standard filenames
45#define DEFAULTCONFIG "main_pcp_linux" //!< default filename of config file
46#define CONVEXENVELOPE "ConvexEnvelope.dat" //!< default filename of convex envelope tecplot data file
47#define KEYSETFILE "KeySets.dat" //!< default filename of BOSSANOVA key sets file
48#define ADJACENCYFILE "Adjacency.dat" //!< default filename of BOSSANOVA adjacancy file
49#define TEFACTORSFILE "TE-Factors.dat" //!< default filename of BOSSANOVA total energy factors file
50#define FORCESFILE "Forces-Factors.dat" //!< default filename of BOSSANOVA force factors file
51#define HCORRECTIONSUFFIX "Hcorrection.dat" //!< default filename of BOSSANOVA H correction file (unwanted saturation interaction)
52#define FITCONSTANTSUFFIX "FitConstant.dat" //!< suffix of default filename of BOSSANOVA fit constants file (unwanted saturation interaction)
53#define SHIELDINGSUFFIX "sigma_all.csv" //!< default filename of BOSSANOVA shieldings file
54#define SHIELDINGPASSUFFIX "sigma_all_PAS.csv" //!< default filename of BOSSANOVA shieldings PAS file
55#define ORDERATSITEFILE "OrderAtSite.dat" //!< default filename of BOSSANOVA Bond Order at each atom file
56#define ENERGYPERFRAGMENT "EnergyPerFragment" //!< default filename of BOSSANOVA Energy contribution Per Fragment file
57#define FRAGMENTPREFIX "BondFragment" //!< default filename prefix of BOSSANOVA fragment config and directories
58#define STANDARDCONFIG "unknown.conf" //!< default filename of standard config file
59#define STANDARDELEMENTSDB "elements.db" //!< default filename of elements data base with masses, Z, VanDerWaals radii, ...
60#define STANDARDVALENCEDB "valence.db" //!< default filename of valence number per element database
61#define STANDARDORBITALDB "orbitals.db" //!< default filename of orbitals per element database
62#define STANDARDHBONDDISTANCEDB "Hbonddistance.db" //!< default filename of typial bond distance to hydrogen database
63#define STANDARDHBONDANGLEDB "Hbondangle.db" //!< default filename of typial bond angle to hydrogen database
64
65// some values
66#define SOLVENTDENSITY_A 0.6022142
67#define SOLVENTDENSITY_a0 0.089238936
68
69
70#define UPDATECOUNT 10 //!< update ten sites per BOSSANOVA interval
71
72#endif /*DEFS_HPP_*/
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