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1 | /*
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2 | * analysis_bonds.hpp
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3 | *
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4 | * Created on: Nov 7, 2009
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5 | * Author: heber
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6 | */
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7 |
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8 | #ifndef ANALYSIS_BONDS_HPP_
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9 | #define ANALYSIS_BONDS_HPP_
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10 |
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11 | using namespace std;
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12 |
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13 | /*********************************************** includes ***********************************/
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14 |
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15 | // include config.h
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16 | #ifdef HAVE_CONFIG_H
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17 | #include <config.h>
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18 | #endif
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19 |
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20 | /*********************************************** defines ***********************************/
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21 |
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22 | #define HBRIDGEDISTANCE 3.5 //!< HBridge distance from PCCP Vol 10. 4802-4813
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23 |
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24 | /****************************************** forward declarations *****************************/
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25 |
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26 | class element;
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27 | class MoleculeListClass;
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28 | class molecule;
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29 |
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30 | /********************************************** declarations *******************************/
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31 |
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32 | void GetMaxMinMeanBondCount(const molecule * const mol, double &Min, double &Mean, double &Max);
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33 | void MinMeanMaxBondDistanceBetweenElements(const molecule *mol, element *type1, element *type2, double &Min, double &Mean, double &Max);
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34 |
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35 | int CountHydrogenBridgeBonds(MoleculeListClass * const molecules, element * InterfaceElement);
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36 | int CountBondsOfTwo(MoleculeListClass * const molecules, const element * const first, const element * const second);
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37 | int CountBondsOfThree(MoleculeListClass * const molecules, const element * const first, const element * const second, const element * const third);
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38 |
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39 | #endif /* ANALYSIS_BONDS_HPP_ */
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