/* * vmg - a versatile multigrid solver * Copyright (C) 2012 Institute for Numerical Simulation, University of Bonn * * vmg is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * vmg is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see . */ /** * @file settings.cpp * @author Julian Iseringhausen * @date Mon Jan 2 18:45:22 2012 * * @brief Computes several MPI-related settings. * */ #ifdef HAVE_CONFIG_H #include #endif #ifdef HAVE_MPI #include #ifdef HAVE_MARMOT #include #include #endif #else #error MPI is needed to compile CommMPISettings #endif #include #include #include #include "base/index.hpp" #include "comm/comm.hpp" #include "comm/mpi/settings.hpp" #include "discretization/boundary_value_setter.hpp" #include "grid/multigrid.hpp" #include "grid/tempgrid.hpp" #include "mg.hpp" using namespace VMG; Grid& VMG::MPI::Settings::FinerGrid(const Grid& grid) { assert(finer_grids.find(&grid) != finer_grids.end()); return *finer_grids.find(&grid)->second; } Grid& VMG::MPI::Settings::CoarserGrid(const Grid& grid) { assert(coarser_grids.find(&grid) != coarser_grids.end()); return *coarser_grids.find(&grid)->second; } MPI_Comm VMG::MPI::Settings::CommunicatorGlobal(const Grid& grid) const { assert(communicators_global.find(grid.Level()) != communicators_global.end()); return communicators_global.find(grid.Level())->second; } MPI_Comm VMG::MPI::Settings::CommunicatorLocal(const Grid& grid) const { KeyUnsorted k(grid, 0); assert(communicators_local.find(k) != communicators_local.end()); return communicators_local.find(k)->second; } VMG::MPI::DatatypesGlobal& VMG::MPI::Settings::DatatypesGlobal(const Grid& grid_old, const Grid& grid_new, const int& direction) { KeyUnsorted k(grid_old, grid_new, direction); assert(datatypes_global.find(k) != datatypes_global.end()); return datatypes_global.find(k)->second; } VMG::MPI::DatatypesLocal& VMG::MPI::Settings::DatatypesLocal(const Grid& grid) { KeyUnsorted k(grid, 0); assert(datatypes_local.find(k) != datatypes_local.end()); return datatypes_local.find(k)->second; } void VMG::MPI::Settings::ComputeSettings(Multigrid& sol, Multigrid& rhs, MPI_Comm& comm_global) { std::map::const_iterator grid_iter; Comm& comm = *MG::GetComm(); /* * Create coarser grids */ for (int i=sol.MaxLevel(); i>sol.MinLevel(); --i) { TempGrid* temp_grid = new TempGrid(); temp_grid->SetPropertiesToCoarser(sol(i), comm.BoundaryConditions()); if (temp_grid->Global().LocalBegin().IsComponentwiseGreaterOrEqual(sol(i-1).Global().LocalBegin()) && temp_grid->Global().LocalEnd().IsComponentwiseLessOrEqual(sol(i-1).Global().LocalEnd())) { delete temp_grid; coarser_grids.insert(std::make_pair(&sol(i), &sol(i-1))); }else { coarser_grids.insert(std::make_pair(&sol(i), temp_grid)); } } //FIXME for (int i=rhs.MaxLevel(); i>rhs.MinLevel(); --i) { TempGrid* temp_grid = new TempGrid(); temp_grid->SetPropertiesToCoarser(rhs(i), comm.BoundaryConditions()); if (temp_grid->Global().LocalBegin().IsComponentwiseGreaterOrEqual(rhs(i-1).Global().LocalBegin()) && temp_grid->Global().LocalEnd().IsComponentwiseLessOrEqual(rhs(i-1).Global().LocalEnd())) { delete temp_grid; coarser_grids.insert(std::make_pair(&rhs(i), &rhs(i-1))); }else { coarser_grids.insert(std::make_pair(&rhs(i), temp_grid)); } } /* * Create finer grids */ for (int i=sol.MinLevel(); iSetPropertiesToFiner(sol(i), comm.BoundaryConditions()); if (temp_grid->Global().LocalBegin() == sol(i+1).Global().LocalBegin() && temp_grid->Global().LocalEnd() == sol(i+1).Global().LocalEnd()) { delete temp_grid; finer_grids.insert(std::make_pair(&sol(i), &sol(i+1))); }else { finer_grids.insert(std::make_pair(&sol(i), temp_grid)); } } for (int i=rhs.MinLevel(); iSetPropertiesToFiner(rhs(i), comm.BoundaryConditions()); if (temp_grid->Global().LocalBegin() == rhs(i+1).Global().LocalBegin() && temp_grid->Global().LocalEnd() == rhs(i+1).Global().LocalEnd()) { delete temp_grid; finer_grids.insert(std::make_pair(&rhs(i), &rhs(i+1))); }else { finer_grids.insert(std::make_pair(&rhs(i), temp_grid)); } } /* * Create global communicators */ for (int i=sol.MinLevel()+1; isol.MinLevel(); --i) CreateLocalCommunicator(comm_global, CoarserGrid(sol(i))); if (MG::GetFactory().TestObject("PARTICLE_NEAR_FIELD_CELLS")) CreateLocalCommunicator(comm_global, comm.GetParticleGrid()); /* * Create single grid datatypes */ for (int i=sol.MinLevel(); i<=sol.MaxLevel(); ++i) datatypes_local.insert(std::make_pair(KeyUnsorted(sol(i), 0), VMG::MPI::DatatypesLocal(sol(i), CommunicatorLocal(sol(i)), true))); for (grid_iter=finer_grids.begin(); grid_iter!=finer_grids.end(); ++grid_iter) datatypes_local.insert(std::make_pair(KeyUnsorted(*grid_iter->second, 0), VMG::MPI::DatatypesLocal(*grid_iter->second, CommunicatorLocal(*grid_iter->second), true))); for (grid_iter=coarser_grids.begin(); grid_iter!=coarser_grids.end(); ++grid_iter) datatypes_local.insert(std::make_pair(KeyUnsorted(*grid_iter->second, 0), VMG::MPI::DatatypesLocal(*grid_iter->second, CommunicatorLocal(*grid_iter->second), true))); if (MG::GetFactory().TestObject("PARTICLE_NEAR_FIELD_CELLS")) datatypes_local.insert(std::make_pair(KeyUnsorted(comm.GetParticleGrid(), 0), VMG::MPI::DatatypesLocal(comm.GetParticleGrid(), CommunicatorLocal(comm.GetParticleGrid()), true))); /* * Create two grid datatypes */ for (int i=sol.MinLevel(); isol.MinLevel(); --i) { AddDatatypeGlobal(sol(i), FinerGrid(sol(i-1)), 0); AddDatatypeGlobal(FinerGrid(sol(i-1)), sol(i), 1); } InitializeBoundaryValues(); } void VMG::MPI::Settings::CreateGlobalCommunicator(MPI_Comm& comm_global, const Grid* grid_1, const Grid* grid_2, const Grid* grid_3) { int rank; MPI_Comm comm_new; const bool in_communicator = (grid_1->Global().LocalSize().Product() > 0) || (grid_2 && grid_2->Global().LocalSize().Product() > 0) || (grid_3 && grid_3->Global().LocalSize().Product() > 0); MPI_Comm_rank(comm_global, &rank); if (in_communicator) { Index dims, periods, coords; MPI_Comm comm_temp; MPI_Cart_get(comm_global, 3, dims.vec(), periods.vec(), coords.vec()); MPI_Comm_split(comm_global, 1, rank, &comm_temp); dims = GlobalDims(comm_temp, coords); MPI_Cart_create(comm_temp, 3, dims.vec(), periods.vec(), 0, &comm_new); MPI_Comm_free(&comm_temp); }else { MPI_Comm_split(comm_global, MPI_UNDEFINED, rank, &comm_new); } communicators_global.insert(std::make_pair(grid_1->Level(), comm_new)); } void VMG::MPI::Settings::CreateLocalCommunicator(MPI_Comm& comm_global, const Grid& grid) { int rank, comm_equal; MPI_Comm comm_new; std::set::iterator iter; MPI_Comm_rank(comm_global, &rank); if (grid.Global().LocalSize().Product() > 0) { Index dims, periods, coords; MPI_Comm comm_temp; MPI_Cart_get(comm_global, 3, dims.vec(), periods.vec(), coords.vec()); MPI_Comm_split(comm_global, 1, rank, &comm_temp); dims = GlobalDims(comm_temp, coords); MPI_Cart_create(comm_temp, 3, dims.vec(), periods.vec(), 0, &comm_new); MPI_Comm_free(&comm_temp); }else { MPI_Comm_split(comm_global, MPI_UNDEFINED, rank, &comm_new); } if (comm_new != MPI_COMM_NULL) { for (iter=communicators_local_unique.begin(); iter!=communicators_local_unique.end(); ++iter) { if (*iter != MPI_COMM_NULL) { MPI_Comm_compare(comm_new, *iter, &comm_equal); assert(comm_equal != MPI_SIMILAR); if (comm_equal == MPI_IDENT || comm_equal == MPI_CONGRUENT) { MPI_Comm_free(&comm_new); comm_new = *iter; break; } } } } std::pair::iterator, bool> insert_result = communicators_local_unique.insert(comm_new); communicators_local.insert(std::make_pair(KeyUnsorted(grid, 0), *insert_result.first)); } void VMG::MPI::Settings::AddDatatypeGlobal(const Grid& grid_old, const Grid& grid_new, const int& direction) { MPI_Comm comm = CommunicatorGlobal(grid_old); // Insert into map std::pair< std::map::iterator, bool > insert_result = datatypes_global.insert(std::make_pair(VMG::MPI::KeyUnsorted(grid_old, grid_new, direction), VMG::MPI::DatatypesGlobal())); VMG::MPI::DatatypesGlobal& dt_global = insert_result.first->second; bool dt_is_new = insert_result.second; if (comm != MPI_COMM_NULL) { Index begin, end, offset_old, offset_new; int rank, size; MPI_Comm_rank(comm, &rank); MPI_Comm_size(comm, &size); std::vector buffer; buffer.resize(6*size); // Compute local offset for ghost cells for (int i=0; i<3; ++i) { offset_old[i] = (grid_old.Local().HaloSize1()[i] > 0 ? grid_old.Local().Begin()[i] : 0); offset_new[i] = (grid_new.Local().HaloSize1()[i] > 0 ? grid_new.Local().Begin()[i] : 0); } // Publish which grid part this process can offer if (&grid_old == &grid_new) { for (int i=0; i<6; ++i) buffer[6*rank+i] = 0; }else { for (int i=0; i<3; ++i) { buffer[6*rank+i] = grid_old.Global().LocalBegin()[i]; buffer[6*rank+i+3] = grid_old.Global().LocalEnd()[i]; } } MPI_Allgather(MPI_IN_PLACE, 6, MPI_INT, &buffer.front(), 6, MPI_INT, comm); if (dt_is_new) { // Decide who offers a useful grid part for (int i=0; i 0) { // This process has a useful part dt_global.Receive().push_back(VMG::MPI::Datatype(grid_new.Local().SizeTotal(), end - begin, begin - grid_new.Global().LocalBegin() + offset_new, i, 0, 0, true)); } } } // Publish which grid parts this process needs for (int i=0; i<3; ++i) { buffer[6*rank+i] = grid_new.Global().LocalBegin()[i]; buffer[6*rank+i+3] = grid_new.Global().LocalEnd()[i]; } MPI_Allgather(MPI_IN_PLACE, 6, MPI_INT, &buffer.front(), 6, MPI_INT, comm); if (dt_is_new) { // Decide who needs a part of my grid for (int i=0; i 0) { // This process needs one of my parts dt_global.Send().push_back(VMG::MPI::Datatype(grid_old.Local().SizeTotal(), end - begin, begin - grid_old.Global().LocalBegin() + offset_old, i, 0, 0, true)); } } } } } MPI_Datatype& VMG::MPI::Settings::Datatype(const Index& begin, const Index& end, const Index& size_local, const Index& size_global, const int& level) { KeyUnsorted k(begin, end, size_local, size_global, level, 0); std::map::iterator iter = datatypes.find(k); if (iter != datatypes.end()) return iter->second; MPI_Datatype dt; Index sizes = size_local; Index subsizes = end - begin; Index starts = begin; MPI_Type_create_subarray(3, sizes.vec(), subsizes.vec(), starts.vec(), MPI_ORDER_C, MPI_DOUBLE, &dt); MPI_Type_commit(&dt); return datatypes.insert(std::make_pair(k, dt)).first->second; } Index VMG::MPI::Settings::GlobalDims(MPI_Comm comm, Index pos) { std::set unique_set[3]; Index dims; int size; MPI_Comm_size(comm, &size); int* coordinates = new int[3*size]; MPI_Allgather(pos.vec(), 3, MPI_INT, coordinates, 3, MPI_INT, comm); for (int i=0; i(unique_set[j].size()); delete [] coordinates; return dims; } void VMG::MPI::Settings::InitializeBoundaryValues() { assert(bv_ranks.size() == 0); if (MG::GetFactory().TestObject("BOUNDARY_VALUE_SETTER")) { Index coord; const int level_index = MG::GetRhs()->MaxLevel() - MG::GetRhs()->GlobalMaxLevel(); const std::vector& bvs = MG::GetBoundaryValueSetter()->BoundaryValues(); const std::map >& global = MG::GetComm()->DecomposedGlobal(); assert(global.find(0)->second[level_index].BoundaryType() == GlobalMax); MPI_Comm comm = CommunicatorLocal((*MG::GetRhs())(MG::GetRhs()->GlobalMaxLevel())); bv_ranks.reserve(bvs.size()); for (std::vector::const_iterator iter_b = bvs.begin(); iter_b != bvs.end(); ++iter_b) { for (std::map >::const_iterator iter_g = global.begin(); iter_g != global.end(); ++iter_g) { if (iter_b->GetIndex().IsComponentwiseGreaterOrEqual(iter_g->second[level_index].LocalBegin()) && iter_b->GetIndex().IsComponentwiseLess(iter_g->second[level_index].LocalEnd())) { bv_ranks.push_back(0); coord = iter_g->first; MPI_Cart_rank(comm, coord.vec(), &bv_ranks.back()); break; } } } } } std::string VMG::MPI::Settings::ToString() const { std::stringstream str; std::map::const_iterator iter_global; std::map::const_iterator iter_local; str << "#### MPI_SETTINGS ####" << std::endl; for (iter_global = datatypes_global.begin(); iter_global != datatypes_global.end(); ++iter_global) str << iter_global->second << std::endl; for (iter_local = datatypes_local.begin(); iter_local != datatypes_local.end(); ++iter_local) str << iter_local->second << std::endl; str << "######################"; return str.str(); } std::ostream& VMG::MPI::operator<<(std::ostream& out, const VMG::MPI::Settings& settings) { return out << settings.ToString(); } VMG::MPI::Settings::Settings() { } VMG::MPI::Settings::~Settings() { std::map::iterator iter_comm_global; for (iter_comm_global=communicators_global.begin(); iter_comm_global!=communicators_global.end(); ++iter_comm_global) if (iter_comm_global->second != MPI_COMM_NULL) MPI_Comm_free(&iter_comm_global->second); /* * We simply copied some communicators so we have to make sure that we free * each communicator exactly once */ std::set::iterator iter_comm_set; for (iter_comm_set=communicators_local_unique.begin(); iter_comm_set!=communicators_local_unique.end(); ++iter_comm_set) if (*iter_comm_set != MPI_COMM_NULL) { MPI_Comm comm_temp = *iter_comm_set; MPI_Comm_free(&comm_temp); } std::map::iterator iter_dt; for (iter_dt=datatypes.begin(); iter_dt!=datatypes.end(); ++iter_dt) if (iter_dt->second != MPI_DATATYPE_NULL) MPI_Type_free(&iter_dt->second); std::map::iterator iter_grid; for (iter_grid=finer_grids.begin(); iter_grid!=finer_grids.end(); ++iter_grid) if (iter_grid->second->Father() == NULL) delete iter_grid->second; for (iter_grid=coarser_grids.begin(); iter_grid!=coarser_grids.end(); ++iter_grid) if (iter_grid->second->Father() == NULL) delete iter_grid->second; }